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Large language models (LLMs) show promising performance on small-scale graph reasoning tasks but fail when handling real-world graphs with complex queries. This phenomenon arises from LLMs' working memory constraints, which result in their…

Artificial Intelligence · Computer Science 2025-10-01 Rongzheng Wang , Shuang Liang , Qizhi Chen , Yihong Huang , Muquan Li , Yizhuo Ma , Dongyang Zhang , Ke Qin , Man-Fai Leung

Recent research on integrating Large Language Models (LLMs) with Graph Neural Networks (GNNs) typically follows two approaches: LLM-centered models, which convert graph data into tokens for LLM processing, and GNN-centered models, which use…

Machine Learning · Computer Science 2024-12-11 Haotong Yang , Xiyuan Wang , Qian Tao , Shuxian Hu , Zhouchen Lin , Muhan Zhang

The advancement of Large Language Models (LLMs) has remarkably pushed the boundaries towards artificial general intelligence (AGI), with their exceptional ability on understanding diverse types of information, including but not limited to…

Computation and Language · Computer Science 2023-10-10 Ziwei Chai , Tianjie Zhang , Liang Wu , Kaiqiao Han , Xiaohai Hu , Xuanwen Huang , Yang Yang

Recent NLP literature has seen growing interest in improving model interpretability. Along this direction, we propose a trainable neural network layer that learns a global interaction graph between words and then selects more informative…

Computation and Language · Computer Science 2023-02-07 Arshdeep Sekhon , Hanjie Chen , Aman Shrivastava , Zhe Wang , Yangfeng Ji , Yanjun Qi

Recent advances in Vision-Language Models (VLMs) have shown promising capabilities in interpreting visualized graph data, offering a new perspective for graph-structured reasoning beyond traditional Graph Neural Networks (GNNs). However,…

Artificial Intelligence · Computer Science 2026-04-27 Qihang Ai , Ruizhou Li , Menghui Wang , Haiyun Jiang

Graph Neural Networks (GNNs) have shown remarkable success across various scientific fields, yet their adoption in critical decision-making is often hindered by a lack of interpretability. Recently, intrinsically interpretable GNNs have…

Machine Learning · Computer Science 2025-10-07 Cheng Xin , Fan Xu , Xin Ding , Jie Gao , Jiaxin Ding

Developments in Graph-Language Models (GLMs) aim to integrate the structural reasoning capabilities of Graph Neural Networks (GNNs) with the semantic understanding of Large Language Models (LLMs). However, we demonstrate that current…

Computation and Language · Computer Science 2025-08-29 Soham Petkar , Hari Aakash K , Anirudh Vempati , Akshit Sinha , Ponnurangam Kumarauguru , Chirag Agarwal

Large Language Models (LLMs) have achieved impressive results in processing text data, which has sparked interest in applying these models beyond textual data, such as graphs. In the field of graph learning, there is a growing interest in…

Artificial Intelligence · Computer Science 2024-10-10 Sheng Ouyang , Yulan Hu , Ge Chen , Yong Liu

Graph neural networks (GNNs) are a powerful architecture for tackling graph learning tasks, yet have been shown to be oblivious to eminent substructures such as cycles. We present TOGL, a novel layer that incorporates global topological…

Machine Learning · Computer Science 2022-03-18 Max Horn , Edward De Brouwer , Michael Moor , Yves Moreau , Bastian Rieck , Karsten Borgwardt

Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Large Language Models (LLMs) have shown remarkable capabilities in processing various data structures, including graphs. While previous research has focused on developing textual encoding methods for graph representation, the emergence of…

Machine Learning · Computer Science 2024-09-16 Zhiqiang Zhong , Davide Mottin

How can we best encode structured data into sequential form for use in large language models (LLMs)? In this work, we introduce a parameter-efficient method to explicitly represent structured data for LLMs. Our method, GraphToken, learns an…

Machine Learning · Computer Science 2024-02-09 Bryan Perozzi , Bahare Fatemi , Dustin Zelle , Anton Tsitsulin , Mehran Kazemi , Rami Al-Rfou , Jonathan Halcrow

As multimodal LLM-driven agents advance in autonomy and generalization, traditional static datasets face inherent scalability limitations and are insufficient for fully assessing their capabilities in increasingly complex and diverse tasks.…

Computation and Language · Computer Science 2026-03-06 Yurun Chen , Xavier Hu , Yuhan Liu , Ziqi Wang , Zeyi Liao , Lin Chen , Feng Wei , Yuxi Qian , Bo Zheng , Keting Yin , Shengyu Zhang

Large Language Models (LLMs) based agents have demonstrated remarkable potential in autonomous task-solving across complex, open-ended environments. A promising approach for improving the reasoning capabilities of LLM agents is to better…

Computation and Language · Computer Science 2025-11-12 Siyu Xia , Zekun Xu , Jiajun Chai , Wentian Fan , Yan Song , Xiaohan Wang , Guojun Yin , Wei Lin , Haifeng Zhang , Jun Wang

Enabling large language models (LLMs) to effectively process and reason with graph-structured data remains a significant challenge despite their remarkable success in natural language tasks. Current approaches either convert graph…

Artificial Intelligence · Computer Science 2025-09-03 Yanbiao Ji , Chang Liu , Xin Chen , Dan Luo , Mei Li , Yue Ding , Wenqing Lin , Hongtao Lu

The proliferation of deep neural networks in various domains has seen an increased need for interpretability of these models. Preliminary work done along this line and papers that surveyed such, are focused on high-level representation…

Computation and Language · Computer Science 2022-08-17 Hassan Sajjad , Nadir Durrani , Fahim Dalvi

While graph neural networks (GNNs) have shown a great potential in various tasks on graph, the lack of transparency has hindered understanding how GNNs arrived at its predictions. Although few explainers for GNNs are explored, the…

Machine Learning · Computer Science 2020-04-29 Chaojie Ji , Ruxin Wang , Hongyan Wu

Recent models have shown that incorporating syntactic knowledge into the semantic role labelling (SRL) task leads to a significant improvement. In this paper, we propose Syntax-aware Graph-to-Graph Transformer (SynG2G-Tr) model, which…

Computation and Language · Computer Science 2023-06-05 Alireza Mohammadshahi , James Henderson

Exploring the application of large language models (LLMs) to graph learning is a emerging endeavor. However, the vast amount of information inherent in large graphs poses significant challenges to this process. This work focuses on the link…

Computation and Language · Computer Science 2024-02-21 Baolong Bi , Shenghua Liu , Yiwei Wang , Lingrui Mei , Xueqi Cheng

Deep learning has become the dominant approach in coping with various tasks in Natural LanguageProcessing (NLP). Although text inputs are typically represented as a sequence of tokens, there isa rich variety of NLP problems that can be best…

Computation and Language · Computer Science 2022-10-21 Lingfei Wu , Yu Chen , Kai Shen , Xiaojie Guo , Hanning Gao , Shucheng Li , Jian Pei , Bo Long