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Discovering genes with similar functions across diverse biomedical contexts poses a significant challenge in gene representation learning due to data heterogeneity. In this study, we resolve this problem by introducing a novel model called…

Machine Learning · Computer Science 2023-10-05 Tianyu Liu , Yuge Wang , Rex Ying , Hongyu Zhao

Graph representation learning (GRL) is critical for graph-structured data analysis. However, most of the existing graph neural networks (GNNs) heavily rely on labeling information, which is normally expensive to obtain in the real world.…

Machine Learning · Computer Science 2022-11-22 Yizhen Zheng , Ming Jin , Shirui Pan , Yuan-Fang Li , Hao Peng , Ming Li , Zhao Li

Affinity graphs are widely used in deep architectures, including graph convolutional neural networks and attention networks. Thus far, the literature has focused on abstracting features from such graphs, while the learning of the affinities…

Computer Vision and Pattern Recognition · Computer Science 2020-03-23 Chu Wang , Babak Samari , Vladimir G. Kim , Siddhartha Chaudhuri , Kaleem Siddiqi

There has been a surge of recent interest in learning representations for graph-structured data. Graph representation learning methods have generally fallen into three main categories, based on the availability of labeled data. The first,…

Machine Learning · Computer Science 2022-04-13 Ines Chami , Sami Abu-El-Haija , Bryan Perozzi , Christopher Ré , Kevin Murphy

Graphs are present in many real-world applications, such as financial fraud detection, commercial recommendation, and social network analysis. But given the high cost of graph annotation or labeling, we face a severe graph label-scarcity…

Machine Learning · Computer Science 2022-08-08 Zhen Tan , Kaize Ding , Ruocheng Guo , Huan Liu

Graph neural networks (GNNs) are a powerful tool to learn representations on graphs by iteratively aggregating features from node neighbourhoods. Many variant models have been proposed, but there is limited understanding on both how to…

Machine Learning · Computer Science 2019-11-14 Michael Lingzhi Li , Meng Dong , Jiawei Zhou , Alexander M. Rush

Unsupervised feature selection is an important method to reduce dimensions of high dimensional data without labels, which is benefit to avoid ``curse of dimensionality'' and improve the performance of subsequent machine learning tasks, like…

Machine Learning · Computer Science 2020-12-29 Yanyong Huang , Zongxin Shen , Fuxu Cai , Tianrui Li , Fengmao Lv

Multiplex networks are complex graph structures in which a set of entities are connected to each other via multiple types of relations, each relation representing a distinct layer. Such graphs are used to investigate many complex…

Graph Neural Networks (GNNs) struggle to balance heterophily and homophily in representation learning, a challenge further amplified in self-supervised settings. We propose H$^3$GNNs, an end-to-end self-supervised learning framework that…

Machine Learning · Computer Science 2025-04-17 Rui Xue , Tianfu Wu

Graph representation learning has made major strides over the past decade. However, in many relational domains, the input data are not suited for simple graph representations as the relationships between entities go beyond pairwise…

Machine Learning · Computer Science 2021-01-20 Balasubramaniam Srinivasan , Da Zheng , George Karypis

Many scientific datasets are of high dimension, and the analysis usually requires visual manipulation by retaining the most important structures of data. Principal curve is a widely used approach for this purpose. However, many existing…

Artificial Intelligence · Computer Science 2016-01-19 Qi Mao , Li Wang , Ivor W. Tsang , Yijun Sun

Hypergraph is a general way of representing high-order relations on a set of objects. It is a generalization of graph, in which only pairwise relations can be represented. It finds applications in various domains where relationships of more…

Machine Learning · Statistics 2021-05-19 Canh Hao Nguyen , Hiroshi Mamitsuka

Unsupervised multiplex graph learning (UMGL) has been shown to achieve significant effectiveness for different downstream tasks by exploring both complementary information and consistent information among multiple graphs. However, previous…

Machine Learning · Computer Science 2023-08-04 Liang Peng , Xin Wang , Xiaofeng Zhu

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

Machine Learning · Computer Science 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

Graph Neural Network (GNN) research has highlighted a relationship between high homophily (i.e., the tendency of nodes of the same class to connect) and strong predictive performance in node classification. However, recent work has found…

Social and Information Networks · Computer Science 2023-11-22 Donald Loveland , Jiong Zhu , Mark Heimann , Benjamin Fish , Michael T. Schaub , Danai Koutra

Graph pre-training has achieved remarkable success in recent years, delivering transferable representations for downstream adaptation. However, most existing methods are designed for either homogeneous or heterogeneous graphs, thereby…

Machine Learning · Computer Science 2026-05-28 Chundong Liang , Yongqi Huang , Dongxiao He , Peiyuan Li , Yawen Li , Di Jin , Weixiong Zhang

Graph self-supervised learning has gained increasing attention due to its capacity to learn expressive node representations. Many pretext tasks, or loss functions have been designed from distinct perspectives. However, we observe that…

Machine Learning · Computer Science 2022-03-23 Wei Jin , Xiaorui Liu , Xiangyu Zhao , Yao Ma , Neil Shah , Jiliang Tang

Convolutional neural networks (CNNs) have achieved great success on grid-like data such as images, but face tremendous challenges in learning from more generic data such as graphs. In CNNs, the trainable local filters enable the automatic…

Machine Learning · Computer Science 2018-09-05 Hongyang Gao , Zhengyang Wang , Shuiwang Ji

In recent years, multi-view learning technologies for various applications have attracted a surge of interest. Due to more compatible and complementary information from multiple views, existing multi-view methods could achieve more…

Machine Learning · Computer Science 2021-07-13 Xiangzhu Meng , Lin Feng , Chonghui Guo

As a fundamental problem in pattern recognition, graph matching has applications in a variety of fields, from computer vision to computational biology. In graph matching, patterns are modeled as graphs and pattern recognition amounts to…

Computer Vision and Pattern Recognition · Computer Science 2008-06-19 Tiberio S. Caetano , Julian J. McAuley , Li Cheng , Quoc V. Le , Alex J. Smola