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Related papers: Comparing and combining some popular NER approache…

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The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Computation and Language · Computer Science 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Unlike widely used Named Entity Recognition (NER) data sets in generic domains, biomedical NER data sets often contain mentions consisting of discontinuous spans. Conventional sequence tagging techniques encode Markov assumptions that are…

Computation and Language · Computer Science 2020-04-29 Xiang Dai , Sarvnaz Karimi , Ben Hachey , Cecile Paris

This paper presents a novel framework, MGNER, for Multi-Grained Named Entity Recognition where multiple entities or entity mentions in a sentence could be non-overlapping or totally nested. Different from traditional approaches regarding…

Computation and Language · Computer Science 2020-04-06 Congying Xia , Chenwei Zhang , Tao Yang , Yaliang Li , Nan Du , Xian Wu , Wei Fan , Fenglong Ma , Philip Yu

Biomedical named entity recognition (BNER) serves as the foundation for numerous biomedical text mining tasks. Unlike general NER, BNER require a comprehensive grasp of the domain, and incorporating external knowledge beyond training data…

Computation and Language · Computer Science 2023-07-06 Junyi Bian , Rongze Jiang , Weiqi Zhai , Tianyang Huang , Hong Zhou , Shanfeng Zhu

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

Computation and Language · Computer Science 2023-05-23 Liangping Ding , Giovanni Colavizza , Zhixiong Zhang

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Nested Named Entity Recognition (NNER) focuses on addressing overlapped entity recognition. Compared to Flat Named Entity Recognition (FNER), annotated resources are scarce in the corpus for NNER. Data augmentation is an effective approach…

Computation and Language · Computer Science 2024-06-19 Xingming Liao , Nankai Lin , Haowen Li , Lianglun Cheng , Zhuowei Wang , Chong Chen

Named Entity Recognition (NER) is a fundamental task in natural language processing. It remains a research hotspot due to its wide applicability across domains. Although recent advances in deep learning have significantly improved NER…

Computation and Language · Computer Science 2025-08-12 Xiaobo Zhang , Congqing He , Ying He , Jian Peng , Dajie Fu , Tien-Ping Tan

This paper describes our approach to the SemEval 2017 Task 10: "Extracting Keyphrases and Relations from Scientific Publications", specifically to Subtask (B): "Classification of identified keyphrases". We explored three different deep…

Computation and Language · Computer Science 2017-04-25 Steffen Eger , Erik-Lân Do Dinh , Ilia Kuznetsov , Masoud Kiaeeha , Iryna Gurevych

Labeled data is a critical resource for training and evaluating machine learning models. However, many real-life datasets are only partially labeled. We propose a semi-supervised machine learning training strategy to improve event detection…

Computer Vision and Pattern Recognition · Computer Science 2022-10-05 Florian Dubost , Erin Hong , Nandita Bhaskhar , Siyi Tang , Daniel Rubin , Christopher Lee-Messer

We present a statistical model for German medical natural language processing trained for named entity recognition (NER) as an open, publicly available model. The work serves as a refined successor to our first GERNERMED model which is…

Computation and Language · Computer Science 2022-10-11 Johann Frei , Ludwig Frei-Stuber , Frank Kramer

Event extraction lies at the cores of investment analysis and asset management in the financial field, and thus has received much attention. The 2019 China conference on knowledge graph and semantic computing (CCKS) challenge sets up a…

Computation and Language · Computer Science 2024-01-23 Congqing He , Xiangyu Zhu , Yuquan Le , Yuzhong Liu , Jianhong Yin

Fine-tuning pretrained ASR models for specific domains is challenging when labeled data is scarce. But unlabeled audio and labeled data from related domains are often available. We propose an incremental semi-supervised learning pipeline…

Many recent named entity recognition (NER) studies criticize flat NER for its non-overlapping assumption, and switch to investigating nested NER. However, existing nested NER models heavily rely on training data annotated with nested…

Computation and Language · Computer Science 2022-11-02 Enwei Zhu , Yiyang Liu , Ming Jin , Jinpeng Li

Medical data poses a daunting challenge for AI algorithms: it exists in many different modalities, experiences frequent distribution shifts, and suffers from a scarcity of examples and labels. Recent advances, including transformers and…

Graph neural networks (GNNs) have received much attention recently because of their excellent performance on graph-based tasks. However, existing research on GNNs focuses on designing more effective models without considering much about the…

Machine Learning · Computer Science 2021-04-20 Han Yang , Xiao Yan , Xinyan Dai , Yongqiang Chen , James Cheng

Molecular Graph Neural Networks (GNNs) are increasingly common in drug discovery, particularly for Quantitative Structure-Activity Relationship (QSAR) studies; yet, their superiority compared to classical molecular featurisation approaches…

Machine Learning · Computer Science 2026-05-12 Sam Money-Kyrle , Markus Dablander , Thierry Hanser , Stephane Werner , Charlotte M. Deane , Garrett M. Morris

Toxicity detection of text has been a popular NLP task in the recent years. In SemEval-2021 Task-5 Toxic Spans Detection, the focus is on detecting toxic spans within passages. Most state-of-the-art span detection approaches employ various…

Computation and Language · Computer Science 2021-08-16 Gunjan Chhablani , Abheesht Sharma , Harshit Pandey , Yash Bhartia , Shan Suthaharan

Named entity recognition (NER) systems that perform well require task-related and manually annotated datasets. However, they are expensive to develop, and are thus limited in size. As there already exists a large number of NER datasets that…

Computation and Language · Computer Science 2019-04-23 Nargiza Nosirova , Mingbin Xu , Hui Jiang

Named entity recognition (NER) has been one of the essential preliminary steps in modern NLP applications. This report focuses on implementing the NER task on finetuning two pretrained models: (i) an encoder-only model (BERT) with a simple…

Computation and Language · Computer Science 2026-05-19 Mei Jia
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