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Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

A new model ecosystem consisting of many interacting species is introduced. The species are connected through a random matrix with a given connectivity. It is shown that the system is organized close to a boundary of marginal stability in…

adap-org · Physics 2007-05-23 Ricard V. Sole , David Alonso , Alan McKane

A primary motivation for our research in digital ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-01-31 Gerard Briscoe , Philippe De Wilde

Microbes require several complex organic molecules for growth. A species may obtain a required factor by taking up molecules released by other species or by synthesizing the molecule. The patterns of uptake and synthesis set a flow of…

Populations and Evolution · Quantitative Biology 2014-02-27 Steven A. Frank

The persistent motility of the individual constituents in microbial suspensions represents a prime example of so-called active matter systems. Cells consume energy, exert forces and move, overall releasing the constraints of equilibrium…

Biological Physics · Physics 2020-11-02 Armand Javadi , Jorge Arrieta , Idan Tuval , Marco Polin

In physics, I noticed subjects not explained by formulas were often not studied, like how uncontrolled growth systems changed form. Weather, businesses, societies, environments, communities, cultures, groups, relationships, lives, and…

Physics and Society · Physics 2023-05-18 Jessie Henshaw

Human activity has an enormous impact on Earth, changing organisms, environments and landscapes, leading to the decline of original ecosystems and irreversible changes that create new combinations of living beings and materials. As a…

Populations and Evolution · Quantitative Biology 2026-02-10 Clara de Goes Monteiro de Carvalho Guimaraes , Pablo Jose Francisco Pena Rodrigues

Photosynthetic organisms use networks of chromophores to absorb sunlight and deliver the energy to reaction centres, where charge separation triggers a cascade of chemical steps to store the energy. We present a detailed model of the…

How large ecosystems can create and maintain the remarkable biodiversity we see in nature is probably one of the biggest open questions in science, attracting attention from different fields, from Theoretical Ecology to Mathematics and…

Populations and Evolution · Quantitative Biology 2023-01-03 Violeta Calleja-Solanas , Nagi Khalil , Jesús Gómez-Gardeñes , Emilio Hernández-García , Sandro Meloni

We present a simple model for describing the dynamics of the interaction between a homogeneous population or society, and the natural resources and reserves that the society needs for its survival. The model is formulated in terms of…

Physics and Society · Physics 2020-04-22 Basil Grammaticos , Ralph Willox , Junkichi Satsuma

The living organism is considered as an open system, whereas Prigogine's approach to the thermodynamics of such systems is used. The approach allows one to formulate the law of individual growth and development (ontogenesis) of the living…

Biological Physics · Physics 2026-03-12 Alexei A. Zotin , Vladimir N. Pokrovskii

In drylands, water availability determines plant population densities and whether they cooperate via facilitation or compete. When water scarcity intensifies, plant densities decrease and competition for water surpasses the benefits of soil…

Dynamical Systems · Mathematics 2024-04-04 Leonardo Pereira Costa de Cruz , Joan Torregrossa , Miguel Berdugo , Josep Sardanyés

We present numerical results based on a simplified ecological system in evolution, showing features of extinction similar to that claimed for the biosystem on Earth. In the model each species consists of a population in interaction with the…

adap-org · Physics 2009-10-28 Guillermo Abramson

The question how complex systems become more organized and efficient with time is open. Examples are, the formation of elementary particles from pure energy, the formation of atoms from particles, the formation of stars and galaxies, the…

Physics and Society · Physics 2017-01-17 Georgi Georgiev , Atanu Chatterjee , Germano Iannacchione

Microbial communities routinely have several alternative stable states observed for the same environmental parameters. Sudden and irreversible transitions between these states make external manipulation of these systems more complicated. To…

Populations and Evolution · Quantitative Biology 2018-10-12 Veronika Dubinkina , Yulia Fridman , Parth Pandey , Sergei Maslov

Soil is a complex, dynamic material, with physical properties that depend on its biological content. We propose a cellular automaton model for self-organizing soil structure, where soil aggregates and serves as food for microbial species.…

Biological Physics · Physics 2025-10-10 Riz Fernando Noronha , Kim Sneppen , Kunihiko Kaneko

At the heart of many contemporary theories of life is the concept of biological self-organisation: organisms have to continuously produce and maintain the conditions of their own existence in order to stay alive. The way in which these…

Quantitative Methods · Quantitative Biology 2025-03-17 Emmy Brown , Sean T. Vittadello

In nature self-organized systems as flock of birds, school of fishes or herd of sheeps have to deal with the presence of external agents such as predators or leaders which modify their internal dynamic. Such situations take into account a…

Biological Physics · Physics 2012-10-15 Giacomo Albi , Lorenzo Pareschi

The biological requirements for an ecosystem to develop and maintain species diversity are in general unknown. Here we consider a model ecosystem of sessile and mutually excluding organisms competing for space [Mathiesen et al. Phys. Rev.…

Populations and Evolution · Quantitative Biology 2012-09-10 Namiko Mitarai , Joachim Mathiesen , Kim Sneppen

Life has a special status, it even has its own science: biology. In many ways, the logic of life seems to differ from that of atoms, molecules, planets, or any other `inanimate object'. However, life is increasingly measured using…

Other Quantitative Biology · Quantitative Biology 2021-12-16 Marc-Antoine Fardin