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In digital pathology, whole slide images (WSIs) are widely used for applications such as cancer diagnosis and prognosis prediction. Visual transformer models have recently emerged as a promising method for encoding large regions of WSIs…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Shuai Jiang , Liesbeth Hondelink , Arief A. Suriawinata , Saeed Hassanpour

Foundation models (FMs) have emerged as a transformative paradigm in medical image analysis, offering the potential to provide generalizable, task-agnostic solutions across a wide range of clinical tasks and imaging modalities. Their…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Karma Phuntsho , Abdullah , Kyungmi Lee , Ickjai Lee , Euijoon Ahn

We consider small-data, large-scale decision problems in which a firm must make many operational decisions simultaneously (e.g., across a large product portfolio) while observing only a few, potentially noisy, data points per instance.…

Machine Learning · Computer Science 2026-02-04 Zishi Zhang , Jinhui Han , Ming Hu , Yijie Peng

The need for skilled medical support is growing in the era of digital healthcare. This research presents an innovative strategy, utilizing the RuBERT model, for categorizing user inquiries in the field of medical consultation with a focus…

Generalizability of deep learning models may be severely affected by the difference in the distributions of the train (source domain) and the test (target domain) sets, e.g., when the sets are produced by different hardware. As a…

Image and Video Processing · Electrical Eng. & Systems 2022-08-02 Ivan Zakazov , Vladimir Shaposhnikov , Iaroslav Bespalov , Dmitry V. Dylov

Current safety alignment methods encode safe behavior implicitly within model parameters, creating a fundamental opacity: we cannot easily inspect why a model refuses a request, nor intervene when its safety judgments fail. We propose Safe…

Machine Learning · Computer Science 2026-03-10 Jingyuan Feng , Andrew Gambardella , Gouki Minegishi , Takeshi Kojima , Yusuke Iwasawa , Yutaka Matsuo

This research on data extraction methods applies recent advances in natural language processing to evidence synthesis based on medical texts. Texts of interest include abstracts of clinical trials in English and in multilingual contexts.…

Computation and Language · Computer Science 2020-01-31 Lena Schmidt , Julie Weeds , Julian P. T. Higgins

The image captioning task is increasingly prevalent in artificial intelligence applications for medicine. One important application is clinical report generation from chest radiographs. The clinical writing of unstructured reports is time…

Image and Video Processing · Electrical Eng. & Systems 2022-05-09 Edward Vendrow , Ethan Schonfeld

We present TFF, which is a Transformer framework for the analysis of functional Magnetic Resonance Imaging (fMRI) data. TFF employs a two-phase training approach. First, self-supervised training is applied to a collection of fMRI scans,…

Image and Video Processing · Electrical Eng. & Systems 2022-08-16 Itzik Malkiel , Gony Rosenman , Lior Wolf , Talma Hendler

Full fine-tuning is a popular approach to adapt Transformer-based pre-trained large language models to a specific downstream task. However, the substantial requirements for computational power and storage have discouraged its widespread…

Computation and Language · Computer Science 2024-05-02 Samir Arora , Liangliang Wang

Transformer-based large language models have remarkable potential to accelerate design optimization for applications such as drug development and materials discovery. Self-supervised pretraining of transformer models requires large-scale…

Machine Learning · Computer Science 2023-10-27 Pei Zhang , Logan Kearney , Debsindhu Bhowmik , Zachary Fox , Amit K. Naskar , John Gounley

Pre-training large-scale neural language models on raw texts has made a significant contribution to improving transfer learning in natural language processing (NLP). With the introduction of transformer-based language models, such as…

Computation and Language · Computer Science 2024-05-08 Shoya Wada , Toshihiro Takeda , Shiro Manabe , Shozo Konishi , Jun Kamohara , Yasushi Matsumura

Transformer-based models are widely used in natural language understanding (NLU) tasks, and multimodal transformers have been effective in visual-language tasks. This study explores distilling visual information from pretrained multimodal…

Computation and Language · Computer Science 2022-05-04 Chan-Jan Hsu , Hung-yi Lee , Yu Tsao

Transformer-based models have achieved remarkable success in natural language and vision tasks, but their application to gene expression analysis remains limited due to data sparsity, high dimensionality, and missing values. We present…

Machine Learning · Computer Science 2025-04-15 Shuai Jiang , Saeed Hassanpour

Attribute classification is crucial for identifying specific characteristics within image regions. Vision-Language Models (VLMs) have been effective in zero-shot tasks by leveraging their general knowledge from large-scale datasets. Recent…

Computer Vision and Pattern Recognition · Computer Science 2025-01-17 Sehyung Kim , Chanhyeong Yang , Jihwan Park , Taehoon Song , Hyunwoo J. Kim

With access to large-scale, unlabeled medical datasets, researchers are confronted with two questions: Should they attempt to pretrain a custom foundation model on this medical data, or use transfer-learning from an existing generalist…

Computer Vision and Pattern Recognition · Computer Science 2025-06-25 Jakob Ambsdorf , Asbjørn Munk , Sebastian Llambias , Anders Nymark Christensen , Kamil Mikolaj , Randall Balestriero , Martin Tolsgaard , Aasa Feragen , Mads Nielsen

Emotion recognition is a challenging task due to limited availability of in-the-wild labeled datasets. Self-supervised learning has shown improvements on tasks with limited labeled datasets in domains like speech and natural language.…

Computation and Language · Computer Science 2021-04-08 Aparna Khare , Srinivas Parthasarathy , Shiva Sundaram

Self-supervised pretraining attempts to enhance model performance by obtaining effective features from unlabeled data, and has demonstrated its effectiveness in the field of histopathology images. Despite its success, few works concentrate…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Zhiyun Song , Penghui Du , Junpeng Yan , Kailu Li , Jianzhong Shou , Maode Lai , Yubo Fan , Yan Xu

There is substantial interest in developing artificial intelligence systems to support radiologists across tasks ranging from segmentation to report generation. Existing computed tomography (CT) foundation models have largely focused on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Rubén Moreno-Aguado , Alba Magallón , Victor Moreno , Yingying Fang , Guang Yang

Parameter-efficient fine-tuning approaches have recently garnered a lot of attention. Having considerably lower number of trainable weights, these methods can bring about scalability and computational effectiveness. In this paper, we look…

Computation and Language · Computer Science 2023-02-23 Mohammad Akbar-Tajari , Sara Rajaee , Mohammad Taher Pilehvar