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With the development of deep learning, standard classification problems have achieved good results. However, conventional classification problems are often too idealistic. Most data in the natural world usually have imbalanced distribution…

Computer Vision and Pattern Recognition · Computer Science 2021-03-15 Yen-Chi Hsu , Cheng-Yao Hong , Wan-Cyuan Fan , Ming-Sui Lee , Davi Geiger , Tyng-Luh Liu

Uncertainty is a key feature of any machine learning model and is particularly important in neural networks, which tend to be overconfident. This overconfidence is worrying under distribution shifts, where the model performance silently…

Machine Learning · Computer Science 2024-03-18 Arthur Thuy , Dries F. Benoit

A key challenge in differential abundance analysis of microbial samples is that the counts for each sample are compositional, resulting in biased comparisons of the absolute abundance across study groups. Normalization-based differential…

Genomics · Quantitative Biology 2024-11-26 Dylan Clark-Boucher , Brent A Coull , Harrison T Reeder , Fenglei Wang , Qi Sun , Jacqueline R Starr , Kyu Ha Lee

Graph clustering groups entities -- the vertices of a graph -- based on their similarity, typically using a complex distance function over a large number of features. Successful integration of clustering approaches in automated…

Machine Learning · Statistics 2020-02-03 Sandhya Saisubramanian , Sainyam Galhotra , Shlomo Zilberstein

Machine learning (ML) algorithms are increasingly deployed in high-stakes decision-making domains such as loan approvals, hiring, and recidivism predictions. While existing fairness metrics (e.g., statistical parity, equal opportunity)…

Machine Learning · Computer Science 2026-05-18 Gideon Popoola , John Sheppard

Explanations provided by Self-explainable Graph Neural Networks (SE-GNNs) are fundamental for understanding the model's inner workings and for identifying potential misuse of sensitive attributes. Although recent works have highlighted that…

Machine Learning · Computer Science 2026-03-03 Steve Azzolin , Stefano Teso , Bruno Lepri , Andrea Passerini , Sagar Malhotra

The ability to interpret Machine Learning (ML) models is becoming increasingly essential. However, despite significant progress in the field, there remains a lack of rigorous characterization regarding the innate interpretability of…

Machine Learning · Computer Science 2024-08-08 Guy Amir , Shahaf Bassan , Guy Katz

Motivation: Predicting cellular responses to genetic perturbations is essential for understanding biological systems and developing targeted therapeutic strategies. While variational autoencoders (VAEs) have shown promise in modeling…

Machine Learning · Computer Science 2025-02-03 Seungheun Baek , Soyon Park , Yan Ting Chok , Mogan Gim , Jaewoo Kang

Probabilistic inferences distill knowledge from graphs to aid human make important decisions. Due to the inherent uncertainty in the model and the complexity of the knowledge, it is desirable to help the end-users understand the inference…

Social and Information Networks · Computer Science 2019-08-21 Chao Chen , Yifei Liu , Xi Zhang , Sihong Xie

Counterfactual explanations (CEs) enhance the interpretability of machine learning models by describing what changes to an input are necessary to change its prediction to a desired class. These explanations are commonly used to guide users'…

Machine Learning · Computer Science 2024-03-07 Anna P. Meyer , Yuhao Zhang , Aws Albarghouthi , Loris D'Antoni

Recently it has become popular to learn sparse Gaussian graphical models (GGMs) by imposing l1 or group l1,2 penalties on the elements of the precision matrix. Thispenalized likelihood approach results in a tractable convex optimization…

Machine Learning · Statistics 2012-05-14 Benjamin Marlin , Mark Schmidt , Kevin Murphy

Distributionally robust optimization tackles out-of-sample issues like overfitting and distribution shifts by adopting an adversarial approach over a range of possible data distributions, known as the ambiguity set. To balance conservatism…

Machine Learning · Computer Science 2025-10-02 Ahmad-Reza Ehyaei , Golnoosh Farnadi , Samira Samadi

We show with several examples that renormalization group (RG) theory can be used to understand singular and reductive perturbation methods in a unified fashion. Amplitude equations describing slow motion dynamics in nonequilibrium phenomena…

Condensed Matter · Physics 2009-10-22 Lin-Yuan Chen , Nigel Goldenfeld , Y. Oono

This paper introduces a conformal inference method to evaluate uncertainty in classification by generating prediction sets with valid coverage conditional on adaptively chosen features. These features are carefully selected to reflect…

Machine Learning · Statistics 2024-10-31 Yanfei Zhou , Matteo Sesia

Counterfactual explanations describe how to modify a feature vector in order to flip the outcome of a trained classifier. Obtaining robust counterfactual explanations is essential to provide valid algorithmic recourse and meaningful…

Machine Learning · Computer Science 2024-03-22 Alexandre Forel , Axel Parmentier , Thibaut Vidal

Graphs are ubiquitous in many applications, such as social networks, knowledge graphs, smart grids, etc.. Graph neural networks (GNN) are the current state-of-the-art for these applications, and yet remain obscure to humans. Explaining the…

Machine Learning · Computer Science 2021-11-22 Yazheng Liu , Xi Zhang , Sihong Xie

Many decision making systems deployed in the real world are not static - a phenomenon known as model adaptation takes place over time. The need for transparency and interpretability of AI-based decision models is widely accepted and thus…

Machine Learning · Computer Science 2021-04-08 André Artelt , Fabian Hinder , Valerie Vaquet , Robert Feldhans , Barbara Hammer

Neural networks make accurate predictions but often fail to provide reliable uncertainty estimates, especially under covariate distribution shifts between training and testing. To address this problem, we propose a Bayesian framework for…

Machine Learning · Statistics 2025-12-22 Yuli Slavutsky , David M. Blei

Graph Neural Networks (GNNs) have shown remarkable performance on graph-structured data. However, recent empirical studies suggest that GNNs are very susceptible to distribution shift. There is still significant ambiguity about why…

Machine Learning · Computer Science 2023-06-07 Qi Zhu , Yizhu Jiao , Natalia Ponomareva , Jiawei Han , Bryan Perozzi

A wide variety of fairness metrics and eXplainable Artificial Intelligence (XAI) approaches have been proposed in the literature to identify bias in machine learning models that are used in critical real-life contexts. However, merely…

Machine Learning · Computer Science 2022-04-12 Romila Pradhan , Jiongli Zhu , Boris Glavic , Babak Salimi