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Multilayer networks represent systems in which there are several topological levels each one representing one kind of interaction or interdependency between the systems' elements. These networks have attracted a lot of attention recently…

Physics and Society · Physics 2015-04-22 Emanuele Cozzo , Guilherme Ferraz de Arruda , Francisco A. Rodrigues , Yamir Moreno

While it is still not possible to describe the neural-level connections of the human brain, we can map the human connectome with several hundred vertices, by the application of diffusion-MRI based techniques. In these graphs, the nodes…

Neurons and Cognition · Quantitative Biology 2020-09-09 Mate Fellner , Balint Varga , Vince Grolmusz

Graph Neural Networks (GNNs), neural network architectures targeted to learning representations of graphs, have become a popular learning model for prediction tasks on nodes, graphs and configurations of points, with wide success in…

Machine Learning · Computer Science 2022-04-19 Stefanie Jegelka

Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect…

Machine Learning · Computer Science 2020-11-10 Emily Alsentzer , Samuel G. Finlayson , Michelle M. Li , Marinka Zitnik

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Hierarchical graph clustering is a common technique to reveal the multi-scale structure of complex networks. We propose a novel metric for assessing the quality of a hierarchical clustering. This metric reflects the ability to reconstruct…

Social and Information Networks · Computer Science 2018-07-16 Thomas Bonald , Bertrand Charpentier

In this paper we consider aspects of geometric observability for hypergraphs, extending our earlier work from the uniform to the nonuniform case. Hypergraphs, a generalization of graphs, allow hyperedges to connect multiple nodes and…

Dynamical Systems · Mathematics 2024-04-12 Joshua Pickard , Cooper Stansbury , Amit Surana , Indika Rajapakse , Anthony Bloch

Current connectivity diagrams of human brain image data are either overly complex or overly simplistic. In this work we introduce simple yet accurate interactive visual representations of multiple brain image structures and the connectivity…

Graphics · Computer Science 2016-09-02 Saad Nadeem , Arie Kaufman

There are three approaches in the current social network analysis study: Graph Representation, Content Mining, and Semantic Analysis. Graph Representation has been used for analyzing social network topology, structural modeling,…

Social and Information Networks · Computer Science 2021-02-18 Andry Alamsyah , Budi Rahardjo , Kuspriyanto

Individual differences in brain functional networks may be related to complex personal identifiers, including health, age, and ability. Understanding and quantifying these differences is a necessary first step towards developing predictive…

Encoding and decoding models are widely used in systems, cognitive, and computational neuroscience to make sense of brain-activity data. However, the interpretation of their results requires care. Decoding models can help reveal whether…

Neurons and Cognition · Quantitative Biology 2019-04-29 Nikolaus Kriegeskorte , Pamela K. Douglas

Many real-world phenomena are naturally modeled by graphs and networks. However, classical graph models are often limited to pairwise interactions and may not adequately capture the richer structures that arise in practice. Higher-order…

Social and Information Networks · Computer Science 2026-05-18 Takaaki Fujita , Florentin Smarandache

Language, as an information medium created by advanced organisms, has always been a concern of neuroscience regarding how it is represented in the brain. Decoding linguistic representations in the evoked brain has shown groundbreaking…

Computation and Language · Computer Science 2024-07-31 Yu Wang , Heyang Liu , Yuhao Wang , Chuan Xuan , Yixuan Hou , Sheng Feng , Hongcheng Liu , Yusheng Liao , Yanfeng Wang

With the advances in high resolution neuroimaging, there has been a growing interest in the detection of functional brain connectivity. Complex network theory has been proposed as an attractive mathematical representation of functional…

Neural and Evolutionary Computing · Computer Science 2018-09-18 Arash Golibagh Mahyari , Selin Aviyente

The human brain works in an unsupervised way, and more than one brain region is essential for lighting up intelligence. Inspired by this, we propose a brain-like heterogeneous network (BHN), which can cooperatively learn a lot of…

Neural and Evolutionary Computing · Computer Science 2020-06-09 Tao Liu

Network analyses in nervous system disorders involves constructing and analyzing anatomical and functional brain networks from neuroimaging data to describe and predict the clinical syndromes that result from neuropathology. A network view…

Neurons and Cognition · Quantitative Biology 2017-01-05 John D. Medaglia , Danielle S. Bassett

In this paper, we will evaluate the performance of graph neural networks in two distinct domains: computer vision and reinforcement learning. In the computer vision section, we seek to learn whether a novel non-redundant representation for…

Machine Learning · Computer Science 2022-03-09 Naman Goyal , David Steiner

Measuring similarity of neural networks to understand and improve their behavior has become an issue of great importance and research interest. In this survey, we provide a comprehensive overview of two complementary perspectives of…

Machine Learning · Computer Science 2025-05-22 Max Klabunde , Tobias Schumacher , Markus Strohmaier , Florian Lemmerich

Functional networks, i.e. networks representing dynamic relationships between the components of a complex system, have been instrumental for our understanding of, among others, the human brain. Due to limited data availability, the…

Physics and Society · Physics 2015-06-24 Massimiliano Zanin

Subgraph representation learning based on Graph Neural Network (GNN) has exhibited broad applications in scientific advancements, such as predictions of molecular structure-property relationships and collective cellular function. In…

Machine Learning · Computer Science 2022-10-17 Yili Shen , Xiao Liu , Cheng-Wei Ju , Jiaxu Yan , Jun Yi , Zhou Lin , Hui Guan
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