English
Related papers

Related papers: Lookdown construction for a Moran seed-bank model

200 papers

We consider a system of interacting diffusions labeled by a geographic space that is given by the hierarchical group $\Omega_N$ of order $N\in\mathbb{N}$. Individuals live in colonies and are subject to resampling and migration as long as…

Probability · Mathematics 2021-10-07 Andreas Greven , Frank den Hollander , Margriet Oomen

In genetics the Moran model describes the neutral evolution of a bi-allelic gene in a population of haploid individuals subjected to mutations. We show in this paper that this model can be mapped into an influence dynamical process on…

Populations and Evolution · Quantitative Biology 2015-03-17 Marcus A. M. de Aguiar , Yaneer Bar-Yam

The Moran process is a random process that models the spread of genetic mutations through graphs. If the graph is connected, the process eventually reaches "fixation", where every vertex is a mutant, or "extinction", where no vertex is a…

Probability · Mathematics 2019-07-16 Leslie Ann Goldberg , John Lapinskas , David Richerby

We consider a multi-type Moran model (in continuous time) with selection and type-dependent mutation. This paper is concerned with the evolution of genealogical information forward in time. For this purpose we define and analytically…

Probability · Mathematics 2015-11-19 Peter Seidel

The goal of this article is to study the limit of the empirical distribution induced by a mutation-selection multi-allelic Moran model, whose dynamic is given by a continuous-time irreducible Markov chain. The rate matrix driving the…

Probability · Mathematics 2022-09-28 Bertrand Cloez , Josué Corujo

Consider a haploid population which has evolved through an exchangeable reproduction dynamics, and in which all individuals alive at time $t$ have a most recent common ancestor (MRCA) who lived at time $A_t$, say. As time goes on, not only…

Probability · Mathematics 2007-05-23 P. Pfaffelhuber , A. Wakolbinger

In the latent voter model, which models the spread of a technology through a social network, individuals who have just changed their choice have a latent period, which is exponential with rate $\lambda$, during which they will not buy a new…

Probability · Mathematics 2016-05-31 Ran Huo , Rick Durrett

One of the classical results of mathematical population genetics states that the frequency of a beneficial mutant's offspring, on its way to fixation in a large population, looks like a logistic curve. A logarithmic scaling (both in height…

Probability · Mathematics 2026-05-12 Florin Boenkost , Felix Hermann , András Tóbiás , Anton Wakolbinger

We consider the Moran process in a graph called the "star" and obtain the asymptotic expression for the fixation probability of a single mutant when the size of the graph is large. The expression obtained corrects the previously known…

Populations and Evolution · Quantitative Biology 2016-03-21 Fabio A. C. C. Chalub

We present a version of the classical Moran model, in which mutations are taken into account; the possibility of mutations was introduced by Moran in his seminal paper, but it is more often overlooked in discussing the Moran model. For this…

Populations and Evolution · Quantitative Biology 2024-08-07 Giuseppe Gaeta

Temporal environmental variations are ubiquitous in nature, yet most of the theoretical works in population genetics and evolution assume fixed environment. Here we analyze the effect of variations in carrying capacity on the fate of a…

Populations and Evolution · Quantitative Biology 2019-12-16 Immanuel Meyer , Nadav M. Shnerb

We study the behavior of a generalized consensus dynamics on a temporal network of interactions, the activity driven network with attractiveness. In this temporal network model, agents are endowed with an intrinsic activity $a$, ruling the…

Physics and Society · Physics 2018-08-15 Antoine Moinet , Alain Barrat , Romualdo Pastor Satorras

In this paper we investigate the spread of advantageous genes in two variants of the F-KPP model with dormancy. The first variant, in which dormant individuals do not move in space and instead form "localized seed banks", has recently been…

Probability · Mathematics 2023-10-30 Jochen Blath , Matthias Hammer , Dave Jacobi , Florian Nie

Microbial dormancy is an evolutionary trait that has emerged independently at various positions across the tree of life. It describes the ability of a microorganism to switch to a metabolically inactive state that can withstand unfavorable…

Probability · Mathematics 2020-04-08 Jochen Blath , András Tóbiás

We present a new model for seed banks, where direct ancestors of individuals may have lived in the near as well as the very far past. The classical Wright-Fisher model, as well as a seed bank model with bounded age distribution considered…

Probability · Mathematics 2013-07-02 Jochen Blath , Adrian González Casanova , Noemi Kurt , Dario Spanò

We consider the classic Moran process modeling the spread of genetic mutations, as extended to structured populations by Lieberman et al.\ (Nature, 2005). In this process, individuals are the vertices of a connected graph $G$. Initially,…

Discrete Mathematics · Computer Science 2016-11-08 George Giakkoupis

The relationship between the Moran model and stochastic Lotka-Volterra competition (SLVC) model is explored via timescale separation arguments. For neutral systems the two are found to be equivalent at long times. For systems with selective…

Populations and Evolution · Quantitative Biology 2015-04-16 George W. A. Constable , Alan J. McKane

Tumors initiate when a population of proliferating cells accumulates a certain number and type of genetic and/or epigenetic alterations. The population dynamics of such sequential acquisition of (epi)genetic alterations has been the topic…

Populations and Evolution · Quantitative Biology 2015-04-09 Peter Ashcroft , Franziska Michor , Tobias Galla

Community assembly is studied using individual-based multispecies models. The models have stochastic population dynamics with mutation, migration, and extinction of species. Mutants appear as a result of mutation of the resident species,…

Populations and Evolution · Quantitative Biology 2010-05-18 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

Ecological theory predicts that the soil seed bank stabilises the composition of annual plant communities in the face of environmental variability. However, long-term data on the community dynamics in the seed bank and the standing…

Populations and Evolution · Quantitative Biology 2021-03-09 Niv DeMalach , Jaime Kigel , Marcelo Sternberg