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Here we introduce the Olfactory Perception (OP) benchmark, designed to assess the capability of large language models (LLMs) to reason about smell. The benchmark contains 1,010 questions across eight task categories spanning odor…

Computation and Language · Computer Science 2026-04-02 Eftychia Makri , Nikolaos Nakis , Laura Sisson , Gigi Minsky , Leandros Tassiulas , Vahid Satarifard , Nicholas A. Christakis

Learning the embedding space, where semantically similar objects are located close together and dissimilar objects far apart, is a cornerstone of many computer vision applications. Existing approaches usually learn a single metric in the…

Computer Vision and Pattern Recognition · Computer Science 2019-06-17 Artsiom Sanakoyeu , Vadim Tschernezki , Uta Büchler , Björn Ommer

In this paper, we propose a novel concept for engineered molecular communication (MC) systems inspired by animal olfaction. We focus on a multi-user scenario where several transmitters wish to communicate with a central receiver. We assume…

Information Theory · Computer Science 2022-03-09 Vahid Jamali , Helene M. Loos , Andrea Buettner , Robert Schober , H. Vincent Poor

The prediction of molecular properties is a crucial task in the field of material and drug discovery. The potential benefits of using deep learning techniques are reflected in the wealth of recent literature. Still, these techniques are…

Machine Learning · Computer Science 2023-09-06 Minghao Guo , Veronika Thost , Samuel W Song , Adithya Balachandran , Payel Das , Jie Chen , Wojciech Matusik

Molecular property prediction, crucial for early drug candidate screening and optimization, has seen advancements with deep learning-based methods. While deep learning-based methods have advanced considerably, they often fall short in fully…

Biomolecules · Quantitative Biology 2024-07-01 Taojie Kuang , Yiming Ren , Zhixiang Ren

A smell in software source code denotes an indication of suboptimal design and implementation decisions, potentially hindering the code understanding and, in turn, raising the likelihood of being prone to changes and faults. Identifying…

Software Engineering · Computer Science 2025-02-10 Anh Ho , Anh M. T. Bui , Phuong T. Nguyen , Amleto Di Salle , Bach Le

Identifying local structural motifs and packing patterns of molecular solids is a challenging task for both simulation and experiment. We demonstrate two novel approaches to characterize local environments in different polymorphs of…

Materials Science · Physics 2024-04-02 Daisuke Kuroshima , Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

Molecule representation learning is crucial for understanding and predicting molecular properties. However, conventional atom-centric models, which treat chemical bonds merely as pairwise interactions, often overlook complex bond-level…

Machine Learning · Computer Science 2026-03-03 Yunqing Liu , Yi Zhou , Wenqi Fan

The insect olfactory system, which includes the antennal lobe (AL), mushroom body (MB), and ancillary structures, is a relatively simple neural system capable of learning. Its structural features, which are widespread in biological neural…

Neurons and Cognition · Quantitative Biology 2018-02-09 Charles B. Delahunt , Jeffrey A. Riffell , J. Nathan Kutz

Studies of insect olfactory processing indicate that odors are represented by rich spatio-temporal patterns of neural activity. These patterns are very difficult to predict a priori, yet they are stimulus specific and reliable upon repeated…

Neurons and Cognition · Quantitative Biology 2007-05-23 M. I. Rabinovich , R. Huerta , A. Volkovskii , Henry D. I. Abarbanel , G. Laurent

Optimizing techniques for discovering molecular structures with desired properties is crucial in artificial intelligence(AI)-based drug discovery. Combining deep generative models with reinforcement learning has emerged as an effective…

Machine Learning · Computer Science 2024-04-01 Jinyeong Park , Jaegyoon Ahn , Jonghwan Choi , Jibum Kim

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Humankind mimics the processes and strategies that nature has perfected and uses them as a model to address its problems. That has recently found a new direction, i.e., a novel communication technology called molecular communication (MC),…

Signal Processing · Electrical Eng. & Systems 2023-11-30 Dilara Aktas , Beyza Ezgi Ortlek , Meltem Civas , Elham Baradari , Ayse Sila Okcu , Melanie Whitfield , Oktay Cetinkaya , Ozgur Baris Akan

This study presents a dynamic neural network model based on the predictive coding framework for perceiving and predicting the dynamic visuo-proprioceptive patterns. In our previous study [1], we have shown that the deep dynamic neural…

Artificial Intelligence · Computer Science 2017-06-09 Jungsik Hwang , Jinhyung Kim , Ahmadreza Ahmadi , Minkyu Choi , Jun Tani

Respiratory diseases remain major global health challenges, and traditional auscultation is often limited by subjectivity, environmental noise, and inter-clinician variability. This study presents an explainable multimodal deep learning…

Sound · Computer Science 2025-12-02 S M Asiful Islam Saky , Md Rashidul Islam , Md Saiful Arefin , Shahaba Alam

It is well established that temporal organization is critical to memory, and that the ability to temporally organize information is fundamental to many perceptual, cognitive, and motor processes. While our understanding of how the brain…

Machine Learning · Statistics 2019-10-15 Tian Chen , Lingge Li , Gabriel Elias , Norbert Fortin , Babak Shahbaba

This paper presents a successful application of deep learning for object recognition based on acoustic data. The shortcomings of previously employed approaches where handcrafted features describing the acoustic data are being used, include…

Computer Vision and Pattern Recognition · Computer Science 2017-08-16 Shan Luo , Leqi Zhu , Kaspar Althoefer , Hongbin Liu

Models that accurately predict properties based on chemical structure are valuable tools in drug discovery. However, for many properties, public and private training sets are typically small, and it is difficult for the models to generalize…

Quantitative Methods · Quantitative Biology 2022-11-08 Oscar Méndez-Lucio , Christos Nicolaou , Berton Earnshaw

Multimodal molecular representation learning, which jointly models molecular graphs and their textual descriptions, enhances predictive accuracy and interpretability by enabling more robust and reliable predictions of drug toxicity,…

Machine Learning · Computer Science 2025-10-21 Yingxu Wang , Kunyu Zhang , Jiaxin Huang , Nan Yin , Siwei Liu , Eran Segal

Molecular representations are inherently task-dependent, yet most pre-trained molecular encoders are not. Task conditioning promises representations that reorganize based on task descriptions, but existing approaches rely on expensive…

Chemical Physics · Physics 2026-02-05 Gordan Prastalo , Kevin Maik Jablonka