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Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…

Computation and Language · Computer Science 2018-11-28 Henghui Zhu , Ioannis Ch. Paschalidis , Amir Tahmasebi

Spatially Resolved Transcriptomics (SRT) is a cutting-edge technique that captures the spatial context of cells within tissues, enabling the study of complex biological networks. Recent graph-based methods leverage both gene expression and…

Machine Learning · Computer Science 2025-06-24 Yunhak Oh , Junseok Lee , Yeongmin Kim , Sangwoo Seo , Namkyeong Lee , Chanyoung Park

We present the creation of an English-Swedish FrameNet-based grammar in Grammatical Framework. The aim of this research is to make existing framenets computationally accessible for multilingual natural language applications via a common…

Computation and Language · Computer Science 2014-05-26 Dana Dannélls , Normunds Grūzītis

In this paper, we propose a spatio-temporal contextual network, STC-Flow, for optical flow estimation. Unlike previous optical flow estimation approaches with local pyramid feature extraction and multi-level correlation, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2020-11-04 Xiaolin Song , Yuyang Zhao , Jingyu Yang

This research addresses the issue of missing structured data in dental records by extracting diagnostic information from unstructured text. The updated periodontology classification system's complexity has increased incomplete or missing…

Computation and Language · Computer Science 2025-06-04 Yao-Shun Chuang , Chun-Teh Lee , Oluwabunmi Tokede , Guo-Hao Lin , Ryan Brandon , Trung Duong Tran , Xiaoqian Jiang , Muhammad F. Walji

[Purpose] To develop a fully automated semantic placenta segmentation model that integrates the U-Net and SegNeXt architectures through ensemble learning. [Methods] A total of 218 pregnant women with suspected placental anomalies who…

Image and Video Processing · Electrical Eng. & Systems 2025-06-05 Shinnosuke Yamamoto , Isso Saito , Eichi Takaya , Ayaka Harigai , Tomomi Sato , Tomoya Kobayashi , Kei Takase , Takuya Ueda

Visual Question Answering (VQA) holds great promise for clinical support, particularly in ophthalmology, where retinal fundus photography is essential for diagnosis. However, ophthalmic VQA benchmarks primarily emphasize answer accuracy,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Xingyue Wang , Bo Liu , Meng Wang , Zhixuan Zhang , Chengcheng Zhu , Huazhu Fu , Jiang Liu

The existing image feature extraction methods are primarily based on the content and structure information of images, and rarely consider the contextual semantic information. Regarding some types of images such as scenes and objects, the…

Computer Vision and Pattern Recognition · Computer Science 2020-01-23 Chiranjibi Sitaula , Yong Xiang , Anish Basnet , Sunil Aryal , Xuequan Lu

With the immersive development in the field of augmented and virtual reality, accurate and speedy eye-tracking is required. Facebook Research has organized a challenge, named OpenEDS Semantic Segmentation challenge for per-pixel…

Computer Vision and Pattern Recognition · Computer Science 2019-10-09 Priya Kansal , Sabari Nathan

A lot of information on the web is geographically referenced. Discovering and retrieving this geographic information to satisfy various users needs across both open and distributed Spatial Data Infrastructures (SDI) poses eminent research…

Information Retrieval · Computer Science 2014-06-10 Adeyinka K. Akanbi , Olusanya Y. Agunbiade , Sadiq Kuti , Olumuyiwa J. Dehinbo

The fundamental process of evidence extraction and synthesis in evidence-based medicine involves extracting PICO (Population, Intervention, Comparison, and Outcome) elements from biomedical literature. However, Outcomes, being the most…

Computation and Language · Computer Science 2025-06-09 Yiliang Zhou , Abigail M. Newbury , Gongbo Zhang , Betina Ross Idnay , Hao Liu , Chunhua Weng , Yifan Peng

The spatial attention mechanism captures long-range dependencies by aggregating global contextual information to each query location, which is beneficial for semantic segmentation. In this paper, we present a sparse spatial attention…

Computer Vision and Pattern Recognition · Computer Science 2021-09-07 Mengyu Liu , Hujun Yin

The goal of sign language recognition (SLR) is to help those who are hard of hearing or deaf overcome the communication barrier. Most existing approaches can be typically divided into two lines, i.e., Skeleton-based and RGB-based methods,…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Xiaolong Shen , Zhedong Zheng , Yi Yang

We study the problem of jointly reasoning about language and vision through a navigation and spatial reasoning task. We introduce the Touchdown task and dataset, where an agent must first follow navigation instructions in a real-life visual…

Computer Vision and Pattern Recognition · Computer Science 2020-05-19 Howard Chen , Alane Suhr , Dipendra Misra , Noah Snavely , Yoav Artzi

In agriculture, the majority of vision systems perform still image classification. Yet, recent work has highlighted the potential of spatial and temporal cues as a rich source of information to improve the classification performance. In…

Robotics · Computer Science 2022-06-28 Claus Smitt , Michael Halstead , Alireza Ahmadi , Chris McCool

Named entity recognition often fails in idiosyncratic domains. That causes a problem for depending tasks, such as entity linking and relation extraction. We propose a generic and robust approach for high-recall named entity recognition. Our…

Computation and Language · Computer Science 2016-08-25 Sebastian Arnold , Felix A. Gers , Torsten Kilias , Alexander Löser

Training medical image analysis models requires large amounts of expertly annotated data which is time-consuming and expensive to obtain. Images are often accompanied by free-text radiology reports which are a rich source of information. In…

We present a methodology combining surface NLP and Machine Learning techniques for ranking asbtracts and generating summaries based on annotated corpora. The corpora were annotated with meta-semantic tags indicating the category of…

Information Retrieval · Computer Science 2011-10-27 Fidelia Ibekwe-Sanjuan , Fernandez Silvia , Sanjuan Eric , Charton Eric

We present a corpus of 5,000 richly annotated abstracts of medical articles describing clinical randomized controlled trials. Annotations include demarcations of text spans that describe the Patient population enrolled, the Interventions…

Computation and Language · Computer Science 2018-06-13 Benjamin Nye , Junyi Jessy Li , Roma Patel , Yinfei Yang , Iain J. Marshall , Ani Nenkova , Byron C. Wallace

Spatial transcriptomics (ST) enables mapping gene expression with spatial context but is severely affected by high sparsity and technical noise, which conceals true biological signals and hinders downstream analyses. To address these…

Machine Learning · Computer Science 2026-03-10 Sayeem Bin Zaman , Fahim Hafiz , Riasat Azim