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Automated computational analysis of the vast chemical space is critical for numerous fields of research such as drug discovery and material science. Representation learning techniques have recently been employed with the primary objective…

Quantitative Methods · Quantitative Biology 2023-05-26 Atakan Yüksel , Erva Ulusoy , Atabey Ünlü , Tunca Doğan

In the intersection of molecular science and deep learning, tasks like virtual screening have driven the need for a high-throughput molecular representation generator on large chemical databases. However, as SMILES strings are the most…

Computational Engineering, Finance, and Science · Computer Science 2021-12-28 Wenhao Zhu , Ziyao Li , Lingsheng Cai , Guojie Song

Providing pretrained language models with simple task descriptions in natural language enables them to solve some tasks in a fully unsupervised fashion. Moreover, when combined with regular learning from examples, this idea yields…

Computation and Language · Computer Science 2021-10-05 Timo Schick , Hinrich Schütze

Molecular property prediction (MPP) is a fundamental and crucial task in drug discovery. However, prior methods are limited by the requirement for a large number of labeled molecules and their restricted ability to generalize for unseen and…

Quantitative Methods · Quantitative Biology 2024-10-21 Yuyan Liu , Sirui Ding , Sheng Zhou , Wenqi Fan , Qiaoyu Tan

The increasing fluency and widespread usage of large language models (LLMs) highlight the desirability of corresponding tools aiding detection of LLM-generated text. In this paper, we identify a property of the structure of an LLM's…

Computation and Language · Computer Science 2023-07-25 Eric Mitchell , Yoonho Lee , Alexander Khazatsky , Christopher D. Manning , Chelsea Finn

A syntactic language model (SLM) incrementally generates a sentence with its syntactic tree in a left-to-right manner. We present Generative Pretrained Structured Transformers (GPST), an unsupervised SLM at scale capable of being…

Computation and Language · Computer Science 2024-06-18 Xiang Hu , Pengyu Ji , Qingyang Zhu , Wei Wu , Kewei Tu

Speech pre-training has primarily demonstrated efficacy on classification tasks, while its capability of generating novel speech, similar to how GPT-2 can generate coherent paragraphs, has barely been explored. Generative Spoken Language…

Large-scale pre-trained language models (PLMs) have advanced Graph-to-Text (G2T) generation by processing the linearised version of a graph. However, the linearisation is known to ignore the structural information. Additionally, PLMs are…

Computation and Language · Computer Science 2022-10-20 Jiuzhou Han , Ehsan Shareghi

Discovery of novel and promising materials is a critical challenge in the field of chemistry and material science, traditionally approached through methodologies ranging from trial-and-error to machine learning-driven inverse design. Recent…

Machine Learning · Computer Science 2024-12-13 Dong Hyeon Mok , Seoin Back

Unsupervised pre-training of large neural models has recently revolutionized Natural Language Processing. By warm-starting from the publicly released checkpoints, NLP practitioners have pushed the state-of-the-art on multiple benchmarks…

Computation and Language · Computer Science 2022-08-10 Sascha Rothe , Shashi Narayan , Aliaksei Severyn

Molecular generative models, often employing GPT-style language modeling on molecular string representations, have shown promising capabilities when scaled to large datasets and model sizes. However, it remains unclear and subject to debate…

Machine Learning · Computer Science 2026-02-02 Dong Xu , Qihua Pan , Sisi Yuan , Jianqiang Li , Zexuan Zhu , Junkai Ji

Multimodal large language models (MLLMs) have made impressive progress in many applications in recent years. However, chemical MLLMs that can handle cross-modal understanding and generation remain underexplored. To fill this gap, we propose…

Machine Learning · Computer Science 2025-08-05 Qian Tan , Dongzhan Zhou , Peng Xia , Wanhao Liu , Wanli Ouyang , Lei Bai , Yuqiang Li , Tianfan Fu

This paper studies compressing pre-trained language models, like BERT (Devlin et al.,2019), via teacher-student knowledge distillation. Previous works usually force the student model to strictly mimic the smoothed labels predicted by the…

Computation and Language · Computer Science 2020-05-11 Xing Wu , Yibing Liu , Xiangyang Zhou , Dianhai Yu

The Generative Pre-trained Transformer (GPT) represents a notable breakthrough in the domain of natural language processing, which is propelling us toward the development of machines that can understand and communicate using language in a…

Masked language modeling (MLM) pre-training methods such as BERT corrupt the input by replacing some tokens with [MASK] and then train a model to reconstruct the original tokens. While they produce good results when transferred to…

Computation and Language · Computer Science 2020-03-25 Kevin Clark , Minh-Thang Luong , Quoc V. Le , Christopher D. Manning

Pre-trained language models (PLMs) have achieved remarkable success in natural language generation (NLG) tasks. Up to now, most NLG-oriented PLMs are pre-trained in an unsupervised manner using the large-scale general corpus. In the…

Computation and Language · Computer Science 2023-05-30 Tianyi Tang , Junyi Li , Wayne Xin Zhao , Ji-Rong Wen

This paper presents a self-supervised learning method for pointer-generator networks to improve spoken-text normalization. Spoken-text normalization that converts spoken-style text into style normalized text is becoming an important…

Computation and Language · Computer Science 2021-02-17 Mana Ihori , Naoki Makishima , Tomohiro Tanaka , Akihiko Takashima , Shota Orihashi , Ryo Masumura

Large language models (LLMs) are widely applied in various natural language processing tasks such as question answering and machine translation. However, due to the lack of labeled data and the difficulty of manual annotation for…

Artificial Intelligence · Computer Science 2026-05-27 Xuan Lin , Long Chen , Yile Wang , Yangyang Chen , Xiangxiang Zeng

Generative Pretrained Transformers (GPTs) are foundational Large Language Models (LLMs) for text generation. However, individual LLMs often produce inconsistent outputs and exhibit biases, limiting their representation of diverse language…

Computation and Language · Computer Science 2025-08-06 Mari Ashiga , Wei Jie , Fan Wu , Vardan Voskanyan , Fateme Dinmohammadi , Paul Brookes , Jingzhi Gong , Zheng Wang

How to produce expressive molecular representations is a fundamental challenge in AI-driven drug discovery. Graph neural network (GNN) has emerged as a powerful technique for modeling molecular data. However, previous supervised approaches…

Machine Learning · Computer Science 2020-12-22 Pengyong Li , Jun Wang , Yixuan Qiao , Hao Chen , Yihuan Yu , Xiaojun Yao , Peng Gao , Guotong Xie , Sen Song