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The quality of data augmentation serves as a critical determinant for the performance of contrastive learning in EEG tasks. Although this paradigm is promising for utilizing unlabeled data, static or random augmentation strategies often…

Machine Learning · Computer Science 2026-01-22 Cheol-Hui Lee , Hwa-Yeon Lee , Dong-Joo Kim

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network…

Information Retrieval · Computer Science 2018-10-09 Xuan Wang , Yu Zhang , Xiang Ren , Yuhao Zhang , Marinka Zitnik , Jingbo Shang , Curtis Langlotz , Jiawei Han

Named Entity Recognition (NER) is a machine learning task that traditionally relies on supervised learning and annotated data. Acquiring such data is often a challenge, particularly in specialized fields like medical, legal, and financial…

Computation and Language · Computer Science 2026-04-01 Arthur Elwing Torres , Edleno Silva de Moura , Altigran Soares da Silva , Mario A. Nascimento , Filipe Mesquita

Background and Objective: Biomedical Named Entity Recognition (BioNER) is a foundational task in medical informatics, crucial for downstream applications like drug discovery and clinical trial matching. However, adapting general-domain…

Computation and Language · Computer Science 2025-12-30 Jian Chen , Leilei Su , Cong Sun

In this paper, we investigate data augmentation for text generation, which we call GenAug. Text generation and language modeling are important tasks within natural language processing, and are especially challenging for low-data regimes. We…

Computation and Language · Computer Science 2020-10-13 Steven Y. Feng , Varun Gangal , Dongyeop Kang , Teruko Mitamura , Eduard Hovy

In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER…

Computation and Language · Computer Science 2020-09-22 Usman Naseem , Matloob Khushi , Vinay Reddy , Sakthivel Rajendran , Imran Razzak , Jinman Kim

Enhancing the generalization capability of robotic learning to enable robots to operate effectively in diverse, unseen scenes is a fundamental and challenging problem. Existing approaches often depend on pretraining with large-scale data…

Robotics · Computer Science 2026-02-17 Xinhua Wang , Kun Wu , Zhen Zhao , Hu Cao , Yinuo Zhao , Zhiyuan Xu , Meng Li , Shichao Fan , Di Wu , Yixue Zhang , Ning Liu , Zhengping Che , Jian Tang

In Biomedical Natural Language Processing (BioNLP) tasks, such as Relation Extraction, Named Entity Recognition, and Text Classification, the scarcity of high-quality data remains a significant challenge. This limitation poisons large…

Computation and Language · Computer Science 2025-04-01 Zhengyi Zhao , Shubo Zhang , Bin Liang , Binyang Li , Kam-Fai Wong

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Text augmentation is an effective technique for addressing the problem of insufficient data in natural language processing. However, existing text augmentation methods tend to focus on few-shot scenarios and usually perform poorly on large…

Computation and Language · Computer Science 2024-04-02 Heng Yang , Ke Li

Biomedical named entity recognition (NER) is a critial task that aims to identify structured information in clinical text, which is often replete with complex, technical terms and a high degree of variability. Accurate and reliable NER can…

Computation and Language · Computer Science 2023-05-30 Zhiyi Li , Shengjie Zhang , Yujie Song , Jungyeul Park

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

Computation and Language · Computer Science 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Training a neural network-based biomedical named entity recognition (BioNER) model usually requires extensive and costly human annotations. While several studies have employed multi-task learning with multiple BioNER datasets to reduce…

Computation and Language · Computer Science 2024-12-31 Yu Yin , Hyunjae Kim , Xiao Xiao , Chih Hsuan Wei , Jaewoo Kang , Zhiyong Lu , Hua Xu , Meng Fang , Qingyu Chen

Biomedical named entity recognition (BioNER) seeks to automatically recognize biomedical entities in natural language text, serving as a necessary foundation for downstream text mining tasks and applications such as information extraction…

Computation and Language · Computer Science 2023-05-17 Ling Luo , Chih-Hsuan Wei , Po-Ting Lai , Robert Leaman , Qingyu Chen , Zhiyong Lu

We present a weakly-supervised data augmentation approach to improve Named Entity Recognition (NER) in a challenging domain: extracting biomedical entities (e.g., proteins) from the scientific literature. First, we train a neural NER (NNER)…

Machine Learning · Computer Science 2019-06-04 Joel Mathew , Shobeir Fakhraei , José Luis Ambite

Biomedical Named Entity Recognition (BioNER), task6 in BioASQ (A challenge in large-scale biomedical semantic indexing and question answering), is crucial for extracting information from scientific literature but faces hurdles such as…

Computation and Language · Computer Science 2025-10-13 Ritesh Mehta

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

Computation and Language · Computer Science 2023-05-23 Liangping Ding , Giovanni Colavizza , Zhixiong Zhang

Neural network models have demonstrated impressive performance in predicting pathologies and outcomes from the 12-lead electrocardiogram (ECG). However, these models often need to be trained with large, labelled datasets, which are not…

Machine Learning · Computer Science 2022-04-12 Aniruddh Raghu , Divya Shanmugam , Eugene Pomerantsev , John Guttag , Collin M. Stultz

The state of art natural language processing systems relies on sizable training datasets to achieve high performance. Lack of such datasets in the specialized low resource domains lead to suboptimal performance. In this work, we adapt…

Computation and Language · Computer Science 2021-08-27 Usama Yaseen , Stefan Langer
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