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Most mechanistic predator-prey modelling has involved either parameterization from process rate data or inverse modelling. Here, we take a median road: we aim at identifying the potential benefits of combining datasets, when both population…

Populations and Evolution · Quantitative Biology 2021-02-11 Frederic Barraquand , Olivier Gimenez

Numerical models indicate that collective animal behaviour may emerge from simple local rules of interaction among the individuals. However, very little is known about the nature of such interaction, so that models and theories mostly rely…

Populations and Evolution · Quantitative Biology 2009-11-13 M. Ballerini , N. Cabibbo , R. Candelier , A. Cavagna , E. Cisbani , I. Giardina , V. Lecomte , A. Orlandi , G. Parisi , A. Procaccini , M. Viale , V. Zdravkovic

Interactions among living organisms, from bacteria colonies to human societies, are inherently more complex than interactions among particles and nonliving matter. Group interactions are a particularly important and widespread class,…

Physics and Society · Physics 2013-01-11 Matjaz Perc , Jesús Gómez-Gardeñes , Attila Szolnoki , Luis M. Floría , Yamir Moreno

Markovian population models are suitable abstractions to describe well-mixed interacting particle systems in situation where stochastic fluctuations are significant due to the involvement of low copy particles. In molecular biology,…

Quantitative Methods · Quantitative Biology 2014-01-17 Christoph Zechner , Federico Wadehn , Heinz Koeppl

In this article we provide a systematic experimental method for sorting animals according to socially relevant traits, without assaying them or even tagging them individually. Instead, they are repeatedly subjected to behavioural assays in…

Quantitative Methods · Quantitative Biology 2017-02-23 Alex Szorkovszky , Alexander Kotrschal , James E. Herbert Read , David J. T. Sumpter , Niclas Kolm , Kristiaan Pelckmans

Discrete time, spatially extended models play an important role in ecology, modelling population dynamics of species ranging from micro-organisms to birds. An important question is how 'bottom up', individual-based models can be…

Populations and Evolution · Quantitative Biology 2023-01-20 Linnéa Gyllingberg , David J. T. Sumpter , Åke Brännström

Population structure can have a significant effect on evolution. For some systems with sufficient symmetry, analytic results can be derived within the mathematical framework of evolutionary graph theory which relate to the outcome of the…

Populations and Evolution · Quantitative Biology 2019-03-11 Christopher E. Overton , Mark Broom , Christoforos Hadjichrysanthou , Kieran J. Sharkey

Homophily and social influence are the fundamental mechanisms that drive the evolution of attitudes, beliefs and behaviour within social groups. Homophily relates the similarity between pairs of individuals' attitudinal states to their…

Physics and Society · Physics 2015-06-12 Jonathan Ward , Peter Grindrod

Collective behaviours often need to be expressed through numerical features, e.g., for classification or imitation learning. This problem is often addressed by proposing an ad-hoc feature set for a particular swarm behaviour context,…

Robotics · Computer Science 2026-02-16 André Fialho Jesus , Jonas Kuckling

Classic computational models of collective motion suggest that simple local averaging rules can promote many observed group level patterns. Recent studies, however, suggest that rules simpler than local averaging may be at play in real…

Adaptation and Self-Organizing Systems · Physics 2022-05-19 Vivek Jadhav , Vishwesha Guttal , Danny Raj M

Collective phenomena, whereby agent-agent interactions determine spatial patterns, are ubiquitous in the animal kingdom. On the other hand, movement and space use are also greatly influenced by the interactions between animals and their…

Quantitative Methods · Quantitative Biology 2016-03-21 Jonathan R. Potts , Karl Mokross , Mark A. Lewis

We investigate to what extent the interaction dynamics of a population of wild house mouse (Mus musculus domesticus) in their environment can be explained by a simple stochastic model. We use a Markov chain model to describe the transitions…

Quantitative Methods · Quantitative Biology 2012-12-05 Nicolas Perony , Barbara König , Frank Schweitzer

Many organisms live in populations structured by space and by class, exhibit plastic responses to their social partners, and are subject to non-additive ecological and fitness effects. Social evolution theory has long recognized that all of…

Populations and Evolution · Quantitative Biology 2014-04-24 Jeremy Van Cleve , Erol Akçay

Eco-evolutionary frameworks can explain certain features of communities in which ecological and evolutionary processes occur over comparable timescales. Here, we investigate whether an evolutionary dynamics may interact with the spatial…

Populations and Evolution · Quantitative Biology 2019-12-04 Eduardo H. Colombo , Ricardo Martínez-García , Cristóbal , López , Emilio Hernández-García

In bio-social models, cooperative behaviour has evolved as an adaptive strategy, playing multi-functional roles. One of such roles in populations is to increase the success of survival and reproduction of individuals and their families or…

Dynamical Systems · Mathematics 2024-06-18 Sangeeta Saha , Swadesh Pal , Roderick Melnik

Random walks and related spatial stochastic models have been used in a range of application areas including animal and plant ecology, infectious disease epidemiology, developmental biology, wound healing, and oncology. Classical random walk…

Populations and Evolution · Quantitative Biology 2025-08-22 Michael J. Plank , Matthew J. Simpson , Ruth E. Baker

We introduce a stochastic agent-based model for the flocking dynamics of self-propelled particles that exhibit velocity-alignment interactions with neighbours within their field of view. The stochasticity in the dynamics of the model arises…

Statistical Mechanics · Physics 2019-07-24 Trilochan Bagarti , Shakti N. Menon

Despite the central role of self-assembled groups in animal and human societies, statistical tools to explain their composition are limited. We introduce a statistical framework for cross-sectional observations of groups with exclusive…

Methodology · Statistics 2021-08-03 Marion Hoffman , Per Block , Tom A. B. Snijders

Accurate biodiversity monitoring is essential for effective environmental policy, yet current practices often rely on arbitrarily defined ecosystems, communities, and ad-hoc indicator species, limiting cost-efficiency and reproducibility.…

Applications · Statistics 2025-12-02 Braden Scherting , Otso Ovaskainen , Tomas Roslin , David B. Dunson

Activity recognition and, more generally, behavior inference tasks are gaining a lot of interest. Much of it is work in the context of human behavior. New available tracking technologies for wild animals are generating datasets that…