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Introduction: Quantitative MRI techniques such as T2 and T1\r{ho} mapping are beneficial in evaluating knee joint pathologies; however, long acquisition times limit their clinical adoption. MIXTURE (Multi-Interleaved X-prepared Turbo-Spin…

Currently, the deep neural network is the mainstream for machine learning, and being actively developed for biomedical imaging applications with an increasing emphasis on tomographic reconstruction for MRI, CT, and other imaging modalities.…

Medical Physics · Physics 2018-05-31 Qing Lyu , Tao Xu , Hongming Shan , Ge Wang

Accurate automatic segmentation of brain anatomy from $T_1$-weighted~($T_1$-w) magnetic resonance images~(MRI) has been a computationally intensive bottleneck in neuroimaging pipelines, with state-of-the-art results obtained by unsupervised…

Computer Vision and Pattern Recognition · Computer Science 2018-08-01 Amod Jog , Bruce Fischl

With the advent of convolutional neural networks~(CNN), supervised learning methods are increasingly being used for whole brain segmentation. However, a large, manually annotated training dataset of labeled brain images required to train…

Computer Vision and Pattern Recognition · Computer Science 2019-03-05 Amod Jog , Andrew Hoopes , Douglas N. Greve , Koen Van Leemput , Bruce Fischl

We propose a deep learning-based approach that integrates MRI sequence parameters to improve the accuracy and generalizability of quantitative image synthesis from clinical weighted MRI. Our physics-driven neural network embeds MRI sequence…

Image and Video Processing · Electrical Eng. & Systems 2025-08-12 Lingjing Chen , Chengxiu Zhang , Yinqiao Yi , Yida Wang , Yang Song , Xu Yan , Shengfang Xu , Dalin Zhu , Mengqiu Cao , Yan Zhou , Chenglong Wang , Guang Yang

Purpose: A supervised learning framework is proposed to automatically generate MR sequences and corresponding reconstruction based on the target contrast of interest. Combined with a flexible, task-driven cost function this allows for an…

Magnetic resonance imaging (MRI) acquisition, reconstruction, and segmentation are usually processed independently in the conventional practice of MRI workflow. It is easy to notice that there are significant relevances among these tasks…

Image and Video Processing · Electrical Eng. & Systems 2021-05-17 Zhiwen Wang , Wenjun Xia , Zexin Lu , Yongqiang Huang , Yan Liu , Hu Chen , Jiliu Zhou , Yi Zhang

Fast spin-echo (FSE) pulse sequences for Magnetic Resonance Imaging (MRI) offer important imaging contrast in clinically feasible scan times. T2-shuffling is widely used to resolve temporal signal dynamics in FSE acquisitions by exploiting…

Image and Video Processing · Electrical Eng. & Systems 2023-03-07 Molin Zhang , Junshen Xu , Yamin Arefeen , Elfar Adalsteinsson

Magnetic Resonance Fingerprinting (MRF) is a method to extract quantitative tissue properties such as T1 and T2 relaxation rates from arbitrary pulse sequences using conventional magnetic resonance imaging hardware. MRF pulse sequences have…

Magnetic resonance (MR) imaging is an essential diagnostic tool in clinical medicine. Recently, a variety of deep learning methods have been applied to segmentation tasks in medical images, with promising results for computer-aided…

We introduce a new learning strategy for image enhancement by recurrently training the same simple superresolution (SR) network multiple times. After initially training an SR network by using pairs of a corrupted low resolution (LR) image…

Image and Video Processing · Electrical Eng. & Systems 2019-07-29 Saem Park , Nojun Kwak

We propose methodologies to train highly accurate and efficient deep convolutional neural networks (CNNs) for image super resolution (SR). A cascade training approach to deep learning is proposed to improve the accuracy of the neural…

Computer Vision and Pattern Recognition · Computer Science 2017-11-15 Haoyu Ren , Mostafa El-Khamy , Jungwon Lee

There has been increased interest in the quantitative characterization of tissues based on T2 in abdominal imaging. Techniques based on spin-echo or turbo spin-echo sequences are time consuming because they require multiple acquisitions for…

Medical Physics · Physics 2019-11-12 Mahesh B Keerthivasan , Ali Bilgin , Maria I Altbach

Purpose: To develop, optimize and implement a single shot spiral TSE-sequence at 3 T and to demonstrate its feasibility to acquire artefact free images of the central nervous system with 1 mm spatial resolution in < 200 ms. Theory and…

Medical Physics · Physics 2021-12-01 Juergen Hennig , Antonia Barhoorn , Shuoyue Zhang , Maxim Zaitsev

Magnetic Resonance Imaging (MRI) is a widely used medical imaging modality boasting great soft tissue contrast without ionizing radiation, but unfortunately suffers from long acquisition times. Long scan times can lead to motion artifacts,…

Signal Processing · Electrical Eng. & Systems 2022-07-05 Brett Levac , Sidharth Kumar , Sofia Kardonik , Jonathan I. Tamir

Motion-robust 2D Radial Turbo Spin Echo (RADTSE) pulse sequence can provide a high-resolution composite image, T2-weighted images at multiple echo times (TEs), and a quantitative T2 map, all from a single k-space acquisition. In this work,…

Image and Video Processing · Electrical Eng. & Systems 2020-04-14 Lavanya Umapathy , Mahesh Bharath Keerthivasan , Jean-Phillipe Galons , Wyatt Unger , Diego Martin , Maria I Altbach , Ali Bilgin

Purpose: Neural networks have received recent interest for reconstruction of undersampled MR acquisitions. Ideally network performance should be optimized by drawing the training and testing data from the same domain. In practice, however,…

Computer Vision and Pattern Recognition · Computer Science 2019-05-07 Salman Ul Hassan Dar , Muzaffer Özbey , Ahmet Burak Çatlı , Tolga Çukur

Purpose: The fusion of transrectal ultrasound (TRUS) and magnetic resonance (MR) images for guiding targeted prostate biopsy has significantly improved the biopsy yield of aggressive cancers. A key component of MR-TRUS fusion is image…

Computer Vision and Pattern Recognition · Computer Science 2018-10-16 Grant Haskins , Jochen Kruecker , Uwe Kruger , Sheng Xu , Peter A. Pinto , Brad J. Wood , Pingkun Yan

To develop a deep-learning method for achieving fast high-resolution MR elastography from highly undersampled data without the need of high-quality training dataset. We first framed the deep neural network representation as a nonlinear…

Signal Processing · Electrical Eng. & Systems 2026-01-21 Xi Peng

Convolutional neural networks (CNNs) are essential tools for computer vision tasks, but they lack traditionally desired properties of extracted features that could further improve model performance, e.g., rotational equivariance. Such…

Computer Vision and Pattern Recognition · Computer Science 2025-01-17 Yuexi Du , Jiazhen Zhang , Tal Zeevi , Nicha C. Dvornek , John A. Onofrey
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