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We study the tautomeric transitions in base pairs of DNA considering elastic properties of DNA as classical and tunneling of protons as quantum, and show that the dynamics of the transitions admits of soliton like solutions whose shape and…

Soft Condensed Matter · Physics 2007-05-23 V. L. Golo , Yu. S. Volkov

When matter undergoes a phase transition from one state to another, usually a change in symmetry is observed, as some of the symmetries exhibited are said to be spontaneously broken. The superconducting phase transition in the underdoped…

Strongly Correlated Electrons · Physics 2009-11-07 A. Kaminski , S. Rosenkranz , H. M. Fretwell , J. C. Campuzano , Z. Li , H. Raffy , W. G. Cullen , H. You , C. G. Olson , C. M. Varma , H. H"ochst

The terahertz transmission properties of symmetrical and asymmetrical annular apertures arrays (AAAs) are investigated both experimentally and numerically. It is found that only odd order resonant modes are observed for the symmetrical…

Optics · Physics 2012-07-17 Dan Hu , Changqing Xie , Ming Liu , Yan Zhang

Quantum theory of hydrogen atoms distribution between two complementary nucleotide bases in DNA double helix at moment of replication has been proposed in this work. It bases on two mechanisms of proton tunneling: the Andreev-Meyerovich…

Other Quantitative Biology · Quantitative Biology 2011-06-01 E. K. Ivanova , N. N. Turaeva , B. L. Oksengendler

We present a model of proton tunnelling across DNA hydrogen bonds, compute the characteristic tunnelling time (CTT) from donor to acceptor and discuss its biological implications. The model is a double oscillator characterised by three…

Biological Physics · Physics 2018-07-09 Jingxi Luo

It is known that the spontaneous time translation symmetry breaking can occur in systems periodically driven at a certain period. We predict a spontaneous breaking of time translation symmetry in an atom-cavity system without external…

Quantum Physics · Physics 2024-05-08 T. T. Sergeev , A. A. Zyablovsky , E. S. Andrianov , Yu. E. Lozovik

We consider the influence of a terahertz field on the breathing dynamics of double-stranded DNA. We model the spontaneous formation of spatially localized openings of a damped and driven DNA chain, and find that linear instabilities lead to…

Biological Physics · Physics 2010-01-27 B. S. Alexandrov , V. Gelev , A. R. Bishop , A. Usheva , K. O. Rasmussen

We study the dynamical behaviour of the proton transfer in the hydrogen bonds in the base-pairs of the double helices of the DNA type. Under the assumption that the elastic and the tunnelling degrees of freedom may be coupled, we derive a…

Soft Condensed Matter · Physics 2009-11-07 V. L. Golo , E. I. Kats , M. Peyrard

We argue that the charge fractionalization in quarks has a hidden topological character related to a broken ${\cal Z}_2$ symmetry between integer-charged bare quarks and leptons. The mechanism is a tunneling process occurring in time…

High Energy Physics - Phenomenology · Physics 2009-11-10 Ernesto A. Matute

At strong magnetic fields double-layer two-dimensional-electron-gas systems can form an unusual broken symmetry state with spontaneous inter-layer phase coherence. The system can be mapped to an equivalent system of pseudospin $1/2$…

Condensed Matter · Physics 2009-10-28 Kun Yang , K. Moon , Lotfi Belkhir , H. Mori , S. M. Girvin , A. H. MacDonald , L. Zheng , D. Yoshioka

Complementary strands in DNA double helix show temporary fluctuational openings which are essential to biological functions such as transcription and replication of the genetic information. Such large amplitude fluctuations, known as the…

Biological Physics · Physics 2013-02-12 Marco Zoli

The basis space in the triaxial projected shell model (TPSM) approach is generalized for odd-odd nuclei to include two-neutron and two-proton configurations on the basic one-neutron coupled to one-proton quasiparticle state. The…

Nuclear Theory · Physics 2020-08-26 S. Jehangir , I. Maqbool , G. H. Bhat , J. A. Sheikh , R. Palit , N. Rather

Hydrogen bonds play a pivotal role in chemistry, biology, and condensed-matter physics, where quantum tunnelling can strongly influence structure and dynamics. Isotope substitution (H $\rightarrow$ D) provides a sensitive probe of such…

Chemical Physics · Physics 2025-11-05 Krishna Kingkar Pathak

We present a theoretical study of the interaction between an atom characterized by a degenerate ground state and a reciprocal environment, such as a semiconductor nanoparticle, without the presence of external bias. Our analysis reveals…

Quantum Physics · Physics 2024-03-22 Mário G. Silveirinha , Hugo Terças , Mauro Antezza

Both symmetry and organized breaking of symmetry have a pivotal r\^ole in our understanding of structure and pattern formation in physical systems, including the origin of mass in the Universe and the chiral structure of biological…

Biomolecules · Quantitative Biology 2011-09-05 Martin Lundgren , Antti J. Niemi

We demonstrate terahertz chiral sub-wavelength cavities that break time-reversal symmetry by coupling the degenerate linearly polarized modes of two orthogonal sets of nano-antenna arrays using the inter-Landau level transition of a…

Mesoscale and Nanoscale Physics · Physics 2025-04-29 Johan Andberger , Lorenzo Graziotto , Luca Sacchi , Mattias Beck , Giacomo Scalari , Jérôme Faist

Recent experimental evidence shows that the pi-orbitals along the stacking of base pairs can facilitate the long-range charge transfer in DNA. Proton motion in the base pair hydrogen bonds has also been found to affect the transfer rate. To…

Materials Science · Physics 2009-11-10 Chun-Min Chang , A. H. Castro Neto , A. R. Bishop

The formation of polaron and its migration in a DNA chain are studied within a semiclassical Peyrard-Biship-Holstein polaron model. Comparing the energetics of the polaron system found from the quantum chemical and semiclassical…

Soft Condensed Matter · Physics 2007-09-10 Dr Julia A. Berashevich , Vadim Apalkov , Tapash Chakraborty

The thermodynamical stability of DNA minicircles is investigated by means of path integral techniques. Hydrogen bonds between base pairs on complementary strands can be broken by thermal fluctuations and temporary fluctuational openings…

Soft Condensed Matter · Physics 2015-03-30 Marco Zoli

Central to the enigma of the cuprates is ubiquitous electronic inhomogeneity arising from a variety of electronic orders that coexist with superconductivity, the individual signatures of which have been impossible to disentangle despite…

Superconductivity · Physics 2023-11-02 Riju Banerjee , Emily L. Wang , Eric W. Hudson
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