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Polymerase chain reaction (PCR) testing is the gold standard for diagnosing COVID-19. PCR amplifies the virus DNA 40 times to produce measurements of viral loads that span seven orders of magnitude. Unfortunately, the outputs of these tests…

Quantitative Methods · Quantitative Biology 2022-01-19 Hsin-Po Wang , Ryan Gabrys , Alexander Vardy

We consider a version of the classical group testing problem motivated by PCR testing for COVID-19. In the so-called tropical group testing model, the outcome of a test is the lowest cycle threshold (Ct) level of the individuals pooled…

Information Theory · Computer Science 2024-10-15 Vivekanand Paligadu , Oliver Johnson , Matthew Aldridge

Let $1 \le s < t$, $N \ge 1$ be integers and a complex electronic circuit of size $t$ is said to be an $s$-active, $\; s \ll t$, and can work as a system block if not more than $s$ elements of the circuit are defective. Otherwise, the…

Information Theory · Computer Science 2016-01-26 A. G. D'yachkov , I. V. Vorobyev , N. A. Polyanskii , V. Yu. Shchukin

Identification of defective members of large populations has been widely studied in the statistics community under the name of group testing. It involves grouping subsets of items into different pools and detecting defective members based…

Information Theory · Computer Science 2016-11-18 Mahdi Cheraghchi , Ali Hormati , Amin Karbasi , Martin Vetterli

For large classes of group testing problems, we derive lower bounds for the probability that all significant items are uniquely identified using specially constructed random designs. These bounds allow us to optimize parameters of the…

Statistics Theory · Mathematics 2022-02-17 Jack Noonan , Anatoly Zhigljavsky

In a group testing scheme, a set of tests is designed to identify a small number $t$ of defective items that are present among a large number $N$ of items. Each test takes as input a group of items and produces a binary output indicating…

Information Theory · Computer Science 2016-11-17 Arya Mazumdar

We describe a generalization of the group testing problem termed symmetric group testing. Unlike in classical binary group testing, the roles played by the input symbols zero and one are "symmetric" while the outputs are drawn from a…

Information Theory · Computer Science 2011-08-16 Amin Emad , Jun Shen , Olgica Milenkovic

In group testing, simple binary-output tests are designed to identify a small number $t$ of defective items that are present in a large population of $N$ items. Each test takes as input a group of items and produces a binary output…

Information Theory · Computer Science 2017-04-11 Alexander Barg , Arya Mazumdar

Detection of defective members of large populations has been widely studied in the statistics community under the name "group testing", a problem which dates back to World War II when it was suggested for syphilis screening. There the main…

Information Theory · Computer Science 2009-09-28 Mahdi Cheraghchi , Ali Hormati , Amin Karbasi , Martin Vetterli

We propose a novel infection spread model based on a random connection graph which represents connections between $n$ individuals. Infection spreads via connections between individuals and this results in a probabilistic cluster formation…

Information Theory · Computer Science 2022-03-30 Batuhan Arasli , Sennur Ulukus

We introduce a novel probabilistic group testing framework, termed Poisson group testing, in which the number of defectives follows a right-truncated Poisson distribution. The Poisson model has a number of new applications, including…

Information Theory · Computer Science 2023-07-19 Amin Emad , Olgica Milenkovic

We study the problem of group testing with a non-adaptive randomized algorithm in the random incidence design (RID) model where each entry in the test is chosen randomly independently from $\{0,1\}$ with a fixed probability $p$. The…

Machine Learning · Computer Science 2017-08-10 Nader H. Bshouty , Nuha Diab , Shada R. Kawar , Robert J. Shahla

In the long-studied problem of combinatorial group testing, one is asked to detect a set of $k$ defective items out of a population of size $n$, using $m \ll n$ disjunctive measurements. In the non-adaptive setting, the most widely used…

Information Theory · Computer Science 2020-09-28 Mahdi Cheraghchi , Vasileios Nakos

Cyclic redundancy check (CRC) codes check if a codeword is correctly received. This paper presents an algorithm to design CRC codes that are optimized for the code-specific error behavior of a specified feedforward convolutional code. The…

Information Theory · Computer Science 2015-06-10 Chung-Yu Lou , Babak Daneshrad , Richard D. Wesel

In probabilistic nonadaptive group testing (PGT), we aim to characterize the number of pooled tests necessary to identify a random $k$-sparse vector of defectives with high probability. Recent work has shown that $n$ tests are necessary…

Information Theory · Computer Science 2021-06-15 Larkin Flodin , Arya Mazumdar

In this paper, we introduce a variation of the group testing problem capturing the idea that a positive test requires a combination of multiple ``types'' of item. Specifically, we assume that there are multiple disjoint \emph{semi-defective…

Information Theory · Computer Science 2024-05-10 Thach V. Bui , Jonathan Scarlett

We show that the tensor product of two random linear codes is robustly testable with high probability. This implies that one can obtain pairs of linear codes such that their product and the product of their dual codes are simultaneously…

Information Theory · Computer Science 2023-08-11 Gleb Kalachev , Pavel Panteleev

Among the challenges that the COVID-19 pandemic outbreak revealed is the problem to reduce the number of tests required for identifying the virus carriers in order to contain the viral spread while preserving the tests reliability. To cope…

Information Theory · Computer Science 2021-12-24 Catherine A. Haddad-Zaaknoon

Batch codes serve as critical tools for load balancing in distributed storage systems. While numerous constructions exist for specific batch sizes t, current methodologies predominantly rely on code dimension parameters, limiting their…

Information Theory · Computer Science 2025-04-29 Eldho K. Thomas

Union-free codes and disjunctive codes are two combinatorial structures, which are used in nonadaptive group testing to find a set of $d$ defective elements among $n$ samples by carrying out the minimal number of tests $t$. It is known that…

Information Theory · Computer Science 2022-01-13 Ilya Vorobyev
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