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Deep research systems represent an emerging class of agentic information retrieval methods that generate comprehensive and well-supported reports to complex queries. However, most existing frameworks rely on dynamic commercial search APIs,…

The emerging data-intensive applications are increasingly dependent on data-intensive scalable computing (DISC) systems, such as Apache Spark, to process large data. Despite their popularity, DISC applications are hard to test. In recent…

Software Engineering · Computer Science 2021-03-10 Qian Zhang , Jiyuan Wang , Muhammad Ali Gulzar , Rohan Padhye , Miryung Kim

As supercomputers continue to grow in scale and capabilities, it is becoming increasingly difficult to isolate processor and system level causes of performance degradation. Over the last several years, a significant number of performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-03-03 Hari K. Pyla , Bharath Ramesh , Calvin J. Ribbens , Srinidhi Varadarajan

Developing and maintaining CLP programs requires visualization and explanation tools. However, existing tools are built in an ad hoc way. Therefore porting tools from one platform to another is very difficult. We have shown in previous work…

Programming Languages · Computer Science 2007-05-23 Ludovic Langevine , Pierre Deransart , Mireille Ducasse , Erwan Jahier

Regression testing activities greatly reduce the risk of faulty software release. However, the size of the test suites grows throughout the development process, resulting in time-consuming execution of the test suite and delayed feedback to…

Software Engineering · Computer Science 2023-11-21 Mostafa Mahdieh , Seyed-Hassan Mirian-Hosseinabadi , Mohsen Mahdieh

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

This paper presents Deepchecks, a Python library for comprehensively validating machine learning models and data. Our goal is to provide an easy-to-use library comprising of many checks related to various types of issues, such as model…

High-quality benchmarks are essential for evaluating reasoning and retrieval capabilities of large language models (LLMs). However, curating datasets for this purpose is not a permanent solution as they are prone to data leakage and…

As camera pixel arrays have grown larger and faster, and optical microscopy techniques ever more refined, there has been an explosion in the quantity of data acquired during routine light microcopy. At the single-molecule level, analysis…

Biomolecules · Quantitative Biology 2021-07-07 Jack W Shepherd , Ed J Higgins , Adam J M Wollman , Mark C Leake

Developers create bug-reproducing tests that support debugging by failing as long as the bug is present, and passing once the bug has been fixed. These tests are usually integrated into existing test suites and executed regularly alongside…

Software Engineering · Computer Science 2026-02-04 Andre Hora , Gordon Fraser

Flaky tests pose a significant issue for software testing. A test with a non-deterministic outcome may undermine the reliability of the testing process, making tests untrustworthy. Previous research has identified test order dependency as…

Software Engineering · Computer Science 2025-01-23 Negar Hashemi , Amjed Tahir , Shawn Rasheed , August Shi , Rachel Blagojevic

Command injection vulnerabilities are a significant security threat in dynamic languages like Python, particularly in widely used open-source projects where security issues can have extensive impact. With the proven effectiveness of Large…

Software Engineering · Computer Science 2025-05-22 Yuxuan Wang , Jingshu Chen , Qingyang Wang

Consider a big data multiple testing task, where, due to storage and computational bottlenecks, one is given a very large collection of p-values by splitting into manageable chunks and distributing over thousands of computer nodes. This…

Methodology · Statistics 2018-05-08 Subhadeep Mukhopadhyay

The growth of Python adoption across diverse domains has led to increasingly complex codebases, presenting challenges in maintaining code quality. While numerous tools attempt to address these challenges, they often fall short in providing…

Software Engineering · Computer Science 2025-01-31 Karthik Shivashankar , Antonio Martini

Fuzzy logic is an accepted and well-developed approach for constructing verbal models. Fuzzy based methods are getting more popular, while the engineers deal with more daily life tasks. This paper presents a new Python toolkit for Interval…

Systems and Control · Electrical Eng. & Systems 2025-04-10 Amir Arslan Haghrah , Sehraneh Ghaemi

Different security issues are a common problem for open source packages archived to and delivered through software ecosystems. These often manifest themselves as software weaknesses that may lead to concrete software vulnerabilities. This…

Software Engineering · Computer Science 2021-12-28 Jukka Ruohonen , Kalle Hjerppe , Kalle Rindell

In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not…

Software Engineering · Computer Science 2023-08-03 Lázaro Costa , Susana Barbosa , Jácome Cunha

The Message Passing Interface (MPI) is widely used in parallel, high-performance programming, yet writing bug-free software that uses MPI remains difficult. We introduce DafnyMPI, a novel, scalable approach to formally verifying MPI…

Programming Languages · Computer Science 2025-12-23 Aleksandr Fedchin , Antero Mejr , Hari Sundar , Jeffrey S. Foster

The ability to repeat the experiments from a research study and obtain similar results is a corner stone in experiment-based scientific discovery. This essential feature has been often ignored by the distributed computing and networking…

Networking and Internet Architecture · Computer Science 2014-10-08 Thierry Rakotoarivelo , Guillaume Jourjon , Olivier Mehani , Maximilian Ott , Mike Zink

The advent of modern data processing has led to an increasing tendency towards interdisciplinarity, which frequently involves the importation of different technical approaches. Consequently, there is an urgent need for a unified data…

Machine Learning · Computer Science 2024-06-04 Chen Zhang , Lecheng Jia , Wei Zhang , Ning Wen