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Much of contemporary systems biology owes its success to the abstraction of a network, the idea that diverse kinds of molecular, cellular, and organismal species and interactions can be modeled as relational nodes and edges in a graph of…

In the last decades, great achievements have been made in the development of computing machines. However, due to exponential growth of transistor density and in particular due to tremendously increasing power consumption, researchers expect…

With the increase of research in self-adaptive systems, there is a need to better understand the way research contributions are evaluated. Such insights will support researchers to better compare new findings when developing new knowledge…

The machine learning community currently has no standardized process for documenting datasets, which can lead to severe consequences in high-stakes domains. To address this gap, we propose datasheets for datasets. In the electronics…

Improved software discovery is a prerequisite for greater software reuse: after all, if someone cannot find software for a particular task, they cannot reuse it. Understanding people's approaches and preferences when they look for software…

Software Architecture Descriptions (SADs) are essential for managing the inherent complexity of modern software systems. They enable high-level architectural reasoning, guide design decisions, and facilitate effective communication among…

University research groups in Computational Science and Engineering (CSE) generally lack dedicated funding and personnel for Research Software Engineering (RSE), which, combined with the pressure to maximize the number of scientific…

Software is the key crosscutting technology that enables advances in mathematics, computer science, and domain-specific science and engineering to achieve robust simulations and analysis for science, engineering, and other research fields.…

We present Executable Abstract Programs and analyse their role for software development and documentation. The intuitive understanding of these programs fits the computational mindset of software system engineers and is supported by a…

Software interfaces today generally fall at either end of a spectrum. On one end are programmable systems, which allow expert users (i.e. programmers) to write software artifacts that describe complex abstractions, but programs are…

Scientific processes rely on software as an important tool for data acquisition, analysis, and discovery. Over the years sustainable software development practices have made progress in being considered as an integral component of research.…

Documenting frameworks provides its users and maintainers useful information on that software's architecture, design, and customization. Despite documentation's importance, the process of creating and maintaining it is considered to imply…

Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common…

The evidence-based approach has increasingly been employed to synthesize empirical findings from the primary research in software engineering. Nevertheless, the reproducibility of evidence-based software engineering (EBSE) studies seems to…

Software refactoring plays an important role in software engineering. Developers often turn to refactoring when they want to restructure software to improve its quality without changing its external behavior. Studies show that small-scale…

Documentation is an important mechanism for disseminating software architecture knowledge. Software project teams can employ vastly different formats for documenting software architecture, from unstructured narratives to standardized…

In recent years there has been widespread concern in the scientific community over a reproducibility crisis. Among the major causes that have been identified is statistical: In many scientific research the statistical analysis (including…

Refactoring is the art of improving the design of a system without altering its external behavior. Refactoring has become a well established and disciplined software engineering practice that has attracted a significant amount of research…

Despite the increasing interest in quantum computing, the aspect of development to achieve cost-effective and reliable quantum software applications has been slow. One barrier is the software engineering of quantum programs, which can be…

Understanding the practice of refactoring documentation is of paramount importance in academia and industry. Issue tracking systems are used by most software projects enabling developers, quality assurance, managers, and users to submit…