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Molecular structure elucidation is a fundamental step in understanding chemical phenomena, with applications in identifying molecules in natural products, lab syntheses, forensic samples, and the interstellar medium. We consider the task of…

Machine Learning · Computer Science 2025-03-04 Austin Cheng , Alston Lo , Kin Long Kelvin Lee , Santiago Miret , Alán Aspuru-Guzik

We introduce Pawsterior, a variational flow-matching framework for improved and extended simulation-based inference (SBI). Many SBI problems involve posteriors constrained by structured domains, such as bounded physical parameters or hybrid…

Machine Learning · Computer Science 2026-03-10 Jorge Carrasco-Pollo , Floor Eijkelboom , Jan-Willem van de Meent

This study proposes and analyses a novel higher-order, structure preserving discretization method for inviscid barotropic flows from a Lagrangian perspective. The method is built on a multisymplectic variational principle discretized over a…

Numerical Analysis · Mathematics 2025-12-10 Mukthesh Mahadev , Marc Gerritsma

A material-based, i.e., Lagrangian, methodology for exact integration of flux by volume-preserving flows through a surface has been developed recently in [Karrasch, SIAM J. Appl. Math., 76 (2016), pp. 1178-1190]. In the present paper, we…

Fluid Dynamics · Physics 2020-06-12 Florian Hofherr , Daniel Karrasch

We present a nonparametric Bayesian framework to infer radial distribution functions from experimental scattering measurements with uncertainty quantification using non-stationary Gaussian processes. The Gaussian process prior mean and…

Chemical Physics · Physics 2026-02-03 Harry W. Sullivan , Brennon L. Shanks , Matej Cervenka , Michael P. Hoepfner

High-resolution remote sensing images (RSIs) are crucial for Earth observation applications, yet acquiring them is often limited by sensor constraints and costs. In recent years, generative super-resolution (SR) methods, particularly…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Jiangwei Mo , Xi Lu , Hanlin Wu

We use a coarse-grained molecular model to study the self-assembly process of complexes of cationic and neutral lipids with DNA molecules ("lipoplexes") - a promising nonviral carrier of DNA for gene therapy. We identify the resulting…

Soft Condensed Matter · Physics 2011-05-31 Oded Farago , Niels Grønbech-Jensen

Lagrangian turbulence lies at the core of numerous applied and fundamental problems related to the physics of dispersion and mixing in engineering, bio-fluids, atmosphere, oceans, and astrophysics. Despite exceptional theoretical,…

The usage of neural networks (NNs) for flow reconstruction (FR) tasks from a limited number of sensors is attracting strong research interest, owing to NNs' ability to replicate high dimensional relationships. Trained on a single flow case…

Fluid Dynamics · Physics 2024-06-19 Ali Girayhan Özbay , Sylvain Laizet

Modeling the mechanics of fluid in complex scenes is vital to applications in design, graphics, and robotics. Learning-based methods provide fast and differentiable fluid simulators, however most prior work is unable to accurately model how…

Machine Learning · Computer Science 2023-09-12 Arjun Mani , Ishaan Preetam Chandratreya , Elliot Creager , Carl Vondrick , Richard Zemel

Multiphase systems are ubiquitous in engineering, biology, and materials science, where understanding their complex interactions and rheological behavior is crucial for advancing applications ranging from emulsion stability to cellular…

Fluid Dynamics · Physics 2025-10-27 Andres Santiago Espinosa-Moreno , Nicolas Moreno , Marco Ellero

Decision-making in complex systems often relies on machine learning models, yet highly accurate models such as XGBoost and neural networks can obscure the reasoning behind their predictions. In operations research applications,…

Machine Learning · Computer Science 2025-02-28 Gaurav Arwade , Sigurdur Olafsson

We develop a stochastic model for Lagrangian velocity as it is observed in experimental and numerical fully developed turbulent flows. We define it as the unique statistically stationary solution of a causal dynamics, given by a stochastic…

We study the time-dependent flow behavior of gravity-driven free surface granular flows using the discrete element method and continuum modeling. Discrete element method (DEM) simulations of slightly polydisperse disks flowing over a…

Fluid Dynamics · Physics 2023-04-28 Satyabrata Patro , Sumit Kumar , Anubhav Majumdar , Anurag Tripathi

Elastic filaments are vital to biological, physical and engineering systems, from cilia driving fluid in the lungs to artificial swimmers and micro-robotics. Simulating slender structures requires intricate balance of elastic, body, active,…

Biological Physics · Physics 2023-06-02 Paul Fuchter , Hermes Bloomfield-Gadêlha

Foundation models have transformed machine learning for language and vision, but achieving comparable impact in physical simulation remains a challenge. Data heterogeneity and unstable long-term dynamics inhibit learning from sufficiently…

Shear transformations (i.e., localised rearrangements of particles resulting in the shear deformation of a small region of the sample) are the building blocks of mesoscale models for the flow of disordered solids. In order to compute the…

Soft Condensed Matter · Physics 2015-06-24 Alexandre Nicolas , Francesco Puosi , Hideyuki Mizuno , Jean-Louis Barrat

Modeling the spontaneous evolution of morphology in natural systems and its preservation by proportionate growth remains a major scientific challenge. Yet, it is conceivable that if the basic mechanisms of growth and the coupled kinetic…

Soft Condensed Matter · Physics 2020-12-30 Virginia von Streng , Rami Abi-Akl , Bianca Giovanardi , Tal Cohen

Diffuse-interface theory provides a foundation for the modeling and simulation of microstructure evolution in a very wide range of materials, and for the tracking/capturing of dynamic interfaces between different materials on larger scales.…

Computational Physics · Physics 2018-08-03 Zhijie Xu , Paul Meakin , Alexandre Tartakovsky

Modeling yield stress fluids in complex flow scenarios presents significant challenges, particularly because conventional rheological characterization methods often yield material parameters that are not fully representative of the…