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In this paper we describe a combined combinatorial/numerical approach to studying equilibria and bifurcations in network models arising in Systems Biology. ODE models of the dynamics suffer from high dimensional parameters which presents a…

Dynamical Systems · Mathematics 2024-11-28 Shane Kepley , Konstantin Mischaikow , Elena Queirolo

Sudden and abrupt changes can occur in a nonlinear system within many fields of science when such a system crosses a tipping point and rapid changes of the system occur in response to slow changes in an external forcing. These can occur…

Dynamical Systems · Mathematics 2025-09-05 Paul D. L. Ritchie , Robbin Bastiaansen , Anna S. von der Heydt , Peter Ashwin

Topological Data Analysis (TDA) offers a suite of computational tools that provide quantified shape features in high dimensional data that can be used by modern statistical and predictive machine learning (ML) models. In particular,…

Cryptography and Security · Computer Science 2023-07-06 Dominic Gold , Koray Karabina , Francis C. Motta

We study a dynamical counterpart of bifurcation to invariant torus for a system of interconnected fast phase variables and slowly varying parameters. We show that in such a system, due to the slow evolution of parameters, there arise…

Classical Analysis and ODEs · Mathematics 2015-08-28 A. M. Samoilenko , I. O. Parasyuk , B. V. Repeta

Topological Data Analysis (TDA) is a novel statistical technique, particularly powerful for the analysis of large and high dimensional data sets. Much of TDA is based on the tool of persistent homology, represented visually via persistence…

Applications · Statistics 2017-11-07 Sarit Agami , Robert J. Adler

Living systems exhibit complex yet organized behavior on multiple spatiotemporal scales. To investigate the nature of multiscale coordination in living systems, one needs a meaningful and systematic way to quantify the complex dynamics, a…

Adaptation and Self-Organizing Systems · Physics 2020-03-11 Mengsen Zhang , William D. Kalies , J. A. Scott Kelso , Emmanuelle Tognoli

Phase transitions are a fundamental concept in science describing diverse phenomena ranging from, e.g., the freezing of water to Bose-Einstein condensation. While the concept is well-established in equilibrium, similarly fundamental…

The understanding and prediction of sudden changes in flow patterns is of paramount importance in the analysis of geophysical flows as these rare events relate to critical phenomena such as atmospheric blocking, the weakening of the Gulf…

Dynamical Systems · Mathematics 2020-01-07 Moussa Ndour , Kathrin Padberg-Gehle

In clean and weakly disordered systems, topological and trivial phases having a finite bulk energy gap can transit to each other via a quantum critical point. In presence of strong disorder, both the nature of the phases and the associated…

Disordered Systems and Neural Networks · Physics 2025-06-26 Saikat Mondal , Adhip Agarwala

A method is developed to estimate the properties of a global hydrodynamic instability in turbulent flows from measurement data of the limit-cycle oscillations. For this purpose, the flow dynamics are separated in deterministic contributions…

Fluid Dynamics · Physics 2021-04-21 Moritz Sieber , C. Oliver Paschereit , Kilian Oberleithner

The climate is a complex non-equilibrium dynamical system that relaxes toward a steady state under the continuous input of solar radiation and dissipative mechanisms. The steady state is not necessarily unique. A useful tool to describe the…

Atmospheric and Oceanic Physics · Physics 2023-05-31 Maura Brunetti , Charline Ragon

A wide variety of physical systems ranging from the firing of neurons to eutrophication of lakes to the presence of Arctic summer sea ice exhibit a phenomenon known as tipping. In mathematical models, tipping can be caused by bifurcations,…

Dynamical Systems · Mathematics 2018-03-14 Alanna Hoyer-Leitzel , Alice Nadeau , Andrew Roberts , Andrew Steyer

Topological Data Analysis (TDA) has emerged as a powerful framework for extracting robust and interpretable features from noisy high-dimensional data. In the context of Social Choice Theory, where preference profiles and collective…

Algebraic Topology · Mathematics 2025-07-22 Athanasios Andrikopoulos , Nikolaos Sampanis

Double Hopf bifurcation analysis can be used to reveal some complicated dynamical behavior in a dynamical system, such as the existence or coexistence of periodic orbits, quasi-periodic orbits, or even chaos. In this paper, an algorithm for…

Dynamical Systems · Mathematics 2018-11-27 Yanfei Du , Ben Niu , Yuxiao Guo , Junjie Wei

Complex spectra of dissipative quantum systems may exhibit degeneracies known as exceptional points (EPs). At these points the systems' dynamics may undergo drastic changes. Phenomena associated with EPs and their applications have been…

Quantum Physics · Physics 2025-03-19 Andrei I. Pavlov , Yuval Gefen , Alexander Shnirman

We investigate the singular behavior of information flow near the Hopf bifurcation point by analyzing the learning rate, a key quantity in stochastic thermodynamics. As a model system exhibiting the Hopf bifurcation, we study the…

Statistical Mechanics · Physics 2026-03-04 Kenshin Matsumoto , Shin-ichi Sasa

For spatiotemporal chaos described by partial differential equations, there are generally locations where the dynamical variable achieves its local extremum or where the time partial derivative of the variable vanishes instantaneously. To a…

Chaotic Dynamics · Physics 2013-03-07 Quntao Zhuang , Xun Gao , Qi Ouyang , Hongli Wang

Stochastic Spatio-Temporal processes are prevalent across domains ranging from modeling of plasma to the turbulence in fluids to the wave function of quantum systems. This letter studies a measure-theoretic description of such systems by…

Optimization and Control · Mathematics 2021-05-25 George I. Boutselis , Ethan N. Evans , Marcus A. Pereira , Evangelos A. Theodorou

Two dynamical systems are topologically equivalent when their phase-portraits can be morphed into each other by a homeomorphic coordinate transformation on the state space. The induced equivalence classes capture qualitative properties such…

Optimization and Control · Mathematics 2021-12-15 Wouter Jongeneel , Tobias Sutter , Daniel Kuhn

Persistent Homology (PH) is a fundamental tool in computational topology, designed to uncover the intrinsic geometric and topological features of data across multiple scales. Originating within the broader framework of Topological Data…

Algebraic Topology · Mathematics 2025-05-13 Aurelie Jodelle Kemme , Collins Amburo Agyingi