Related papers: On the Parameterized Complexity of the Perfect Phy…
In this paper, we introduce a new class of parameterized problems, which we call XALP: the class of all parameterized problems that can be solved in $f(k)n^{O(1)}$ time and $f(k)\log n$ space on a non-deterministic Turing Machine with…
The class XNLP consists of (parameterized) problems that can be solved nondeterministically in $f(k)n^{O(1)}$ time and $f(k)\log n$ space, where $n$ is the size of the input instance and $k$ the parameter. The class XALP consists of…
Let XNLP be the class of parameterized problems such that an instance of size n with parameter k can be solved nondeterministically in time $f(k)n^{O(1)}$ and space $f(k)\log(n)$ (for some computable function f). We give a wide variety of…
Given a graph $G$ and a positive integer $k$, the 2-Load coloring problem is to check whether there is a $2$-coloring $f:V(G) \rightarrow \{r,b\}$ of $G$ such that for every $i \in \{r,b\}$, there are at least $k$ edges with both end…
We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…
We study the parameterized complexity of computing the tree-partition-width, a graph parameter equivalent to treewidth on graphs of bounded maximum degree. On one hand, we can obtain approximations of the tree-partition-width efficiently:…
The perfect phylogeny is one of the most used models in different areas of computational biology. In this paper we consider the problem of the Persistent Perfect Phylogeny (referred as P-PP) recently introduced to extend the perfect…
We consider problems that can be formulated as a task of finding an optimal triangulation of a graph w.r.t. some notion of optimality. We present algorithms parameterized by the size of a minimum edge clique cover ($cc$) to such problems.…
In this paper, we study several coloring problems on graphs from the viewpoint of parameterized complexity. We show that Precoloring Extension is fixed-parameter tractable (FPT) parameterized by distance to clique and Equitable Coloring is…
We show that the $b$-Coloring problem is complete for the class XNLP when parameterized by the pathwidth of the input graph. Besides determining the precise parameterized complexity of this problem, this implies that b-Coloring…
In the Colored Clustering problem, one is asked to cluster edge-colored (hyper-)graphs whose colors represent interaction types. More specifically, the goal is to select as many edges as possible without choosing two edges that share an…
In this paper, we showcase the class XNLP as a natural place for many hard problems parameterized by linear width measures. This strengthens existing $W[1]$-hardness proofs for these problems, since XNLP-hardness implies $W[t]$-hardness for…
Many practical problems in almost all scientific and technological disciplines have been classified as computationally hard (NP-hard or even NP-complete). In life sciences, combinatorial optimization problems frequently arise in molecular…
Optimal Morse matchings reveal essential structures of cell complexes which lead to powerful tools to study discrete geometrical objects, in particular discrete 3-manifolds. However, such matchings are known to be NP-hard to compute on…
List colouring is an NP-complete decision problem even if the total number of colours is three. It is hard even on planar bipartite graphs. We give a polynomial-time algorithm for solving list colouring of permutation graphs with a bounded…
Golovach, Paulusma and Song (Inf. Comput. 2014) asked to determine the parameterized complexity of the following problems parameterized by $k$: (1) Given a graph $G$, a clique modulator $D$ (a clique modulator is a set of vertices, whose…
We examine ordered graphs, defined as graphs with linearly ordered vertices, from the perspective of homomorphisms (and colorings) and their complexities. We demonstrate the corresponding computational and parameterized complexities, along…
The perfect phylogeny problem is a classic problem in computational biology, where we seek an unrooted phylogeny that is compatible with a set of qualitative characters. Such a tree exists precisely when an intersection graph associated…
3-list colouring is an NP-complete decision problem. It is hard even on planar bipartite graphs. We give a polynomial-time algorithm for solving 3-list colouring on permutation graphs.
We study the well-established problem of finding an optimal routing of unsplittable flows in a graph. While by now there is an extensive body of work targeting the problem on graph classes such as paths and trees, we aim at using the…