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Proteinoids, or thermal proteins, are produced by heating amino acids to their melting point and initiation of polymerisation to produce polymeric chains. In aqueous solutions proteinoids swell into hollow microspheres. These microspheres…

Emerging Technologies · Computer Science 2023-03-31 Panagiotis Mougkogiannis , Andrew Adamatzky

Proteinoids (thermal proteins) are produced by heating amino acids to their melting point and initiation of polymerisation to produce polymeric chains. Amino acid-like molecules, or proteinoids, can condense at high temperatures to create…

Materials Science · Physics 2023-02-14 Panagiotis Mougkogiannis , Andrew Adamatzky

Proteinoids -- thermal proteins -- are produced by heating amino acids to their melting point and initiation of polymerisation to produce polymeric chains. Proteinoids swell in aqueous solution into hollow microspheres. The proteinoid…

Emerging Technologies · Computer Science 2021-06-03 Andrew Adamatzky

The biological effects of electromagnetic fields on proteins remain controversial beyond well-established thermal mechanisms, particularly with respect to frequency-dependent responses. Here, we propose that electromagnetic waves can…

Chemical Physics · Physics 2026-02-02 Jiafei Chen , Yuanyuan Feng , Jingzhi Feng , Xinyun Zhang , Jinzhen Zhu , Qingmeng Xu

In the present paper we address the problem of the energy downconversion of the light absorbed by a protein into its internal vibrational modes. We consider the case in which the light receptors are fluorophores either naturally…

Biological Physics · Physics 2023-06-05 Elham Faraji , Roberto Franzosi , Stefano Mancini , Marco Pettini

Photoactive proteins absorb light and undergo structural changes that enable them to perform essential biological functions. These proteins are critical for understanding light-induced biological processes, making them important in…

Chemical Physics · Physics 2025-03-28 Sylwia Czach , Jakub Rydzewski , Wiesław Nowak

We derive analytical expressions to describe how light is frequency-shifted when interacting with ultrasound within scattering media, due to the modulation of the refractive index induced by the ultrasound pressure waves. The model is…

Optics · Physics 2024-10-16 Adam Kinos

Nonlinear dynamics of spiking neural networks has recently attracted much interest as an approach to understand possible information processing in the brain and apply it to artificial intelligence. Since information can be processed by…

Exploring and understanding the protein-folding problem has been a long-standing challenge in molecular biology. Here, using molecular dynamics simulation, we reveal how parallel distributed adjacent planar peptide groups of unfolded…

Biomolecules · Quantitative Biology 2019-01-11 Xiaoliang Ma , Chengyu Hou , Liping Shi , Long Li , Jiacheng Li , Lin Ye , Lin Yang , Xiaodong He

Spikes and rhythms organize control and communication in the animal world, in contrast to the bits and clocks of digital technology. As continuous-time signals that can be counted, spikes have a mixed nature. This paper reviews ongoing…

Systems and Control · Electrical Eng. & Systems 2022-03-10 Rodolphe Sepulchre

Vibrational spectra of proteins and topologically disordered solids display a common anomaly at low frequencies, known as Boson peak. We show that such feature in globular proteins can be deciphered in terms of an energy landscape picture,…

Soft Condensed Matter · Physics 2007-05-23 Stefano Ciliberti , Paolo De Los Rios , Francesco Piazza

Proteinoids, or thermal proteins, are inorganic entities formed by heating amino acids to their melting point and commencing polymerisation to form polymeric chains. Typically, their diameters range from 10 to 100 micron. Some amino acids…

Emerging Technologies · Computer Science 2023-02-13 Panagiotis Mougkogiannis , Neil Phillips , Andrew Adamatzky

Neuromorphic computing, inspired by the functionality and efficiency of biological neural systems, holds promise for advancing artificial intelligence and computational paradigms. Resonant tunneling diodes (RTDs), thanks to their ability to…

Our knowledge of the sensory world is encoded by neurons in sequences of discrete, identical pulses termed action potentials or spikes. There is persistent controversy about the extent to which the precise timing of these spikes is relevant…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ilya Nemenman , Geoffrey D. Lewen , William Bialek , Rob R. de Ruyter van Steveninck

Proteinoids, as soft matter fluidic systems, are computational substrates that have been recently proposed for their analog computing capabilities. Such systems exhibit oscillatory electrical activity because of cationic and anionic…

We study the impact of light on the mammalian circadian system using the theory of phase response curves. Using a recently developed ansatz we derive a low-dimensional macroscopic model for the core circadian clock in mammals.…

Neurons and Cognition · Quantitative Biology 2019-10-14 Kevin M. Hannay , Daniel B. Forger , Victoria Booth

The paper describes the means to reveal and characterize slow periodic modulation of qubit frequency. Such modulation can come from different sources and can impact qubit stability. We show that the modulation leads to very sharp peaks in…

Quantum Physics · Physics 2024-08-16 Filip Wudarski , Yaxing Zhang , Juan Atalaya , M. I. Dykman

It is shown that a small subset of modes which are likely to be involved in protein functional motions of large amplitude can be determined by retaining the most robust normal modes obtained using different protein models. This result…

Biomolecules · Quantitative Biology 2007-05-23 Samuel Nicolay , Yves-Henri Sanejouand

Combining experiments and computer simulations, we use a spatially periodic and flashing light-field to direct the motion of phototactic active colloids. Here, the colloids self-organize into a density spike pattern, which resembles a shock…

Soft Condensed Matter · Physics 2019-05-23 Celia Lozano , Benno Liebchen , Borge ten Hagen , Clemens Bechinger , Hartmut Löwen

Squeezed light has revolutionized quantum metrology by enhancing interferometry for sensitive applications such as the detection of gravitational waves. Squeezed light has also played a pivotal role in quantum information science with…

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