Related papers: Model chromatin flows: numerical analysis of linea…
We show that hydrodynamic theories of polar active matter generically possess inhomogeneous traveling solutions. We introduce a unifying dynamical-system framework to establish the shape of these intrinsically nonlinear patterns, and show…
Chromatin and associated proteins constitute the highly folded structure of chromosomes. We consider a self-avoiding polymer model of the chromatin, segments of which may get cross-linked via protein binders that repel each other. The…
Shallow water waves are a striking example of nonlinear hydrodynamics, giving rise to phenomena such as tsunamis and undular waves. These dynamics are typically studied in hundreds-of-meter-long wave flumes. Here, we demonstrate a…
We study numerically the induction mechanisms generated from an array of helical motions distributed along a cylinder. Our flow is a very idealized geometry of the columnar structure that has been proposed for the convective motion inside…
A nonhydrostatic dynamical core has been developed by using the multi-moment finite volume method that ensures the rigorous numerical conservation. To represent the spherical geometry free of polar problems, the cubed-sphere grid is…
The chromosphere in internetwork regions of the quiet Sun was regarded as a static and homogeneous layer for a long time. Thanks to advances in observations and numerical modelling, the wave nature of these atmospheric regions received…
We use molecular dynamics simulations to study the behavior of a compressible Lennard-Jones fluid in simple shear flow in a two-dimensional nanochannel. The system is equilibrated in the fluid phase close to the triple point at which gas,…
The motion of a eukaryotic cell presents a variety of interesting and challenging problems from both a modeling and a computational perspective. The processes span many spatial scales (from molecular to tissue) as well as disparate time…
Ionic liquids constrained at interfaces or restricted in subnanometric pores are increasingly employed in modern technologies, including energy applications. Understanding the details of their behavior in these conditions is therefore…
One of the primary goals of nuclear physics is studying the phase diagram of Quantum Chromodynamics, where a hypothetical critical point serves as a landmark. A systematic model-data comparison of heavy-ion collisions at center-of-mass…
Continuum hydrodynamic models of active liquid crystals have been used to describe dynamic self-organising systems such as bacterial swarms and cytoskeletal gels. A key prediction of such models is the existence of self-stabilising kink…
The incompressible 2D Euler equations on a sphere constitute a fundamental model in hydrodynamics. The long-time behaviour of solutions is largely unknown; statistical mechanics predicts a steady vorticity configuration, but detailed…
Ring polymers exhibit unique flow properties due to their closed chain topology. Despite recent progress, we have not yet achieved a full understanding of the nonequilibrium flow behavior of rings in nondilute solutions where intermolecular…
We use lattice-Boltzmann molecular dynamics (LBMD) simulations to study the compression of a confined polymer immersed in a fluid and pushed by a large spherical colloid with a diameter comparable to the channel width. We examined the…
Low-frequency simulations of a one-layer model with lateral buoyancy variations (i.e., thermodynamically active) have revealed circulatory motions resembling quite closely submesoscale observations in the surface ocean rather than…
The internal motions of biomatter immersed in biofluid are investigated. The interactions between the fragments of biomatter and its surrounding biofluid are modeled using field theory. In the model, the biomatter is coupled to the gauge…
We apply a hybrid Molecular Dynamics and mesoscopic simulation technique to study the dynamics of two dimensional colloidal discs in confined geometries. We calculate the velocity autocorrelation functions, and observe the predicted…
We investigate the dynamics of very large particles freely advected in a turbulent von Karman flow. Contrary to other experiments for which the particle dynamics is generally studied near the geometrical center of the flow, we track the…
We present a computer simulation study, via lattice Boltzmann simulations, of a microscopic model for cytoplasmic streaming in algal cells such as those of Chara corallina. We modelled myosin motors tracking along actin lanes as spheres…
Geometric confinements are frequently encountered in the biological world and strongly affect the stability, topology, and transport properties of active suspensions in viscous flow. Based on a far-field analytical model, the…