English
Related papers

Related papers: Conditional Graph Information Bottleneck for Molec…

200 papers

The dominant paradigm for relation prediction in knowledge graphs involves learning and operating on latent representations (i.e., embeddings) of entities and relations. However, these embedding-based methods do not explicitly capture the…

Machine Learning · Computer Science 2020-02-13 Komal K. Teru , Etienne Denis , William L. Hamilton

Graphs serve as fundamental descriptors for systems composed of interacting elements, capturing a wide array of data types, from molecular interactions to social networks and knowledge graphs. In this paper, we present an exhaustive review…

Machine Learning · Computer Science 2024-11-13 Chenqing Hua

Predicting and enhancing inherent properties based on molecular structures is paramount to design tasks in medicine, materials science, and environmental management. Most of the current machine learning and deep learning approaches have…

Machine Learning · Computer Science 2024-04-08 Zachary R. Fox , Ayana Ghosh

Molecular property prediction (MPP) is a cornerstone of drug discovery and materials science, yet conventional deep learning approaches depend on large labeled datasets that are often unavailable. Few-shot Molecular property prediction…

Machine Learning · Computer Science 2025-10-27 Xiangyang Xu , Hongyang Gao

Relation prediction for knowledge graphs aims at predicting missing relationships between entities. Despite the importance of inductive relation prediction, most previous works are limited to a transductive setting and cannot process…

Artificial Intelligence · Computer Science 2021-07-27 Sijie Mai , Shuangjia Zheng , Yuedong Yang , Haifeng Hu

Molecular property prediction is a key component of AI-driven drug discovery and molecular characterization learning. Despite recent advances, existing methods still face challenges such as limited ability to generalize, and inadequate…

Machine Learning · Computer Science 2024-09-26 Zexing Zhao , Guangsi Shi , Xiaopeng Wu , Ruohua Ren , Xiaojun Gao , Fuyi Li

We proposed the molecular hyper-message passing network (MolHMPN) that predicts the properties of a molecule with prior knowledge-guided subgraph. Modeling higher-order connectivities in molecules is necessary as changes in both the…

Computational Engineering, Finance, and Science · Computer Science 2022-01-05 Fangying Chen , Junyoung Park , Jinkyoo Park

Causal learning is a beneficial approach to analyze the cause and effect relationships among variables in a dataset. A causal graph can be generated from a dataset using a particular causal algorithm, for instance, the PC algorithm or Fast…

Machine Learning · Computer Science 2019-10-09 Teny Handhayani , James Cussens

In business analysis, providing effective recommendations is essential for enhancing company profits. The utilization of graph-based structures, such as bipartite graphs, has gained popularity for their ability to analyze complex data…

Information Retrieval · Computer Science 2025-01-14 Jiayang Wu , Wensheng Gan , Huashen Lu , Philip S. Yu

Knowledge graph embedding (KGE) aims at learning powerful representations to benefit various artificial intelligence applications. Meanwhile, contrastive learning has been widely leveraged in graph learning as an effective mechanism to…

Artificial Intelligence · Computer Science 2023-06-14 Ke Liang , Yue Liu , Sihang Zhou , Wenxuan Tu , Yi Wen , Xihong Yang , Xiangjun Dong , Xinwang Liu

Graph-theoretic approaches offer simplicity, interpretability, and low computational cost for molecular property prediction. Among these, the model proposed by Mukwembi and Nyabadza, based on the external activity $D(G)$ and internal…

Machine Learning · Computer Science 2026-04-23 Anna Niane , Prudence Djagba

Graph-structured data are pervasive in the real-world such as social networks, molecular graphs and transaction networks. Graph neural networks (GNNs) have achieved great success in representation learning on graphs, facilitating various…

Machine Learning · Computer Science 2025-02-27 Zhimeng Guo , Teng Xiao , Zongyu Wu , Charu Aggarwal , Hui Liu , Suhang Wang

Graph transformation formalisms have proven to be suitable tools for the modelling of chemical reactions. They are well established in theoretical studies and increasingly also in practical applications in chemistry. The latter is made…

Discrete Mathematics · Computer Science 2022-08-29 Jakob L. Andersen , Rolf Fagerberg , Juri Kolčák , Christophe V. F. P. Laurent , Daniel Merkle , Nikolai Nøjgaard

Knowledge graphs (KGs) are the key components of various natural language processing applications. To further expand KGs' coverage, previous studies on knowledge graph completion usually require a large number of training instances for each…

Computation and Language · Computer Science 2018-08-29 Wenhan Xiong , Mo Yu , Shiyu Chang , Xiaoxiao Guo , William Yang Wang

Deep learning techniques have dominated the literature on aspect-based sentiment analysis (ABSA), achieving state-of-the-art performance. However, deep models generally suffer from spurious correlations between input features and output…

Computation and Language · Computer Science 2023-12-22 Mingshan Chang , Min Yang , Qingshan Jiang , Ruifeng Xu

Incorporating Knowledge Graphs (KG) into recommeder system has attracted considerable attention. Recently, the technical trend of Knowledge-aware Recommendation (KGR) is to develop end-to-end models based on graph neural networks (GNNs).…

Information Retrieval · Computer Science 2022-08-23 Ding Zou , Wei Wei , Ziyang Wang , Xian-Ling Mao , Feida Zhu , Rui Fang , Dangyang Chen

Multimodal sarcasm detection is a complex task that requires distinguishing subtle complementary signals across modalities while filtering out irrelevant information. Many advanced methods rely on learning shortcuts from datasets rather…

Machine Learning · Computer Science 2025-11-18 Yihua Wang , Qi Jia , Cong Xu , Feiyu Chen , Yuhan Liu , Haotian Zhang , Liang Jin , Lu Liu , Zhichun Wang

Bidirectional language models have better context understanding and perform better than unidirectional models on natural language understanding tasks, yet the theoretical reasons behind this advantage remain unclear. In this work, we…

Computation and Language · Computer Science 2025-10-10 Md Kowsher , Nusrat Jahan Prottasha , Shiyun Xu , Shetu Mohanto , Ozlem Garibay , Niloofar Yousefi , Chen Chen

Graph Transformers have recently attracted attention for molecular property prediction by combining the inductive biases of graph neural networks (GNNs) with the global receptive field of Transformers. However, many existing hybrid…

Machine Learning · Computer Science 2026-04-09 Yi Yang , Ovidiu Daescu

Molecular Relational Learning (MRL) is widely applied in natural sciences to predict relationships between molecular pairs by extracting structural features. The representational similarity between substructure pairs determines the…

Machine Learning · Computer Science 2026-05-25 Peiliang Zhang , Jingling Yuan , Qing Xie , Yongjun Zhu , Lin Li