English
Related papers

Related papers: Streaming $k$-edit approximate pattern matching vi…

200 papers

Computing the edit distance of two strings is one of the most basic problems in computer science and combinatorial optimization. Tree edit distance is a natural generalization of edit distance in which the task is to compute a measure of…

Data Structures and Algorithms · Computer Science 2022-09-16 Debarati Das , Jacob Gilbert , MohammadTaghi Hajiaghayi , Tomasz Kociumaka , Barna Saha , Hamed Saleh

In the $k$-Cut problem, we are given an edge-weighted graph $G$ and an integer $k$, and have to remove a set of edges with minimum total weight so that $G$ has at least $k$ connected components. Prior work on this problem gives, for all $h…

Data Structures and Algorithms · Computer Science 2017-10-25 Anupam Gupta , Euiwoong Lee , Jason Li

Recently [Bhattacharya et al., STOC 2015] provide the first non-trivial algorithm for the densest subgraph problem in the streaming model with additions and deletions to its edges, i.e., for dynamic graph streams. They present a…

Data Structures and Algorithms · Computer Science 2015-07-30 Hossein Esfandiari , MohammadTaghi Hajiaghayi , David P. Woodruff

We study the problem of approximating the value of a Unique Game instance in the streaming model. A simple count of the number of constraints divided by $p$, the alphabet size of the Unique Game, gives a trivial $p$-approximation that can…

Computational Complexity · Computer Science 2020-11-13 Venkatesan Guruswami , Runzhou Tao

In this paper, we address the problem of learning compact similarity-preserving embeddings for massive high-dimensional streams of data in order to perform efficient similarity search. We present a new online method for computing binary…

Machine Learning · Computer Science 2018-02-12 Anne Morvan , Antoine Souloumiac , Cédric Gouy-Pailler , Jamal Atif

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…

Data Structures and Algorithms · Computer Science 2019-08-19 Simone Faro , Arianna Pavone , Francesco Pio Marino

The problem of finding \emph{distance} between \emph{pattern} of length $m$ and \emph{text} of length $n$ is a typical way of generalizing pattern matching to incorporate dissimilarity score. For both Hamming and $L_1$ distances only a…

Data Structures and Algorithms · Computer Science 2018-05-04 Przemysław Uznański

We consider the classic Set Cover problem in the data stream model. For $n$ elements and $m$ sets ($m\geq n$) we give a $O(1/\delta)$-pass algorithm with a strongly sub-linear $\tilde{O}(mn^{\delta})$ space and logarithmic approximation…

Data Structures and Algorithms · Computer Science 2016-05-03 Sariel Har-Peled , Piotr Indyk , Sepideh Mahabadi , Ali Vakilian

We consider the problem of approximating a maximum weighted matching, when the edges of an underlying weighted graph $G(V,E)$ are revealed in a streaming fashion. We analyze a variant of the previously best-known…

Data Structures and Algorithms · Computer Science 2018-05-01 Elena Grigorescu , Morteza Monemizadeh , Samson Zhou

We present data streaming algorithms for the $k$-median problem in high-dimensional dynamic geometric data streams, i.e. streams allowing both insertions and deletions of points from a discrete Euclidean space $\{1, 2, \ldots \Delta\}^d$.…

Data Structures and Algorithms · Computer Science 2017-06-14 Vladimir Braverman , Gereon Frahling , Harry Lang , Christian Sohler , Lin F. Yang

We develop a new algorithmic technique that allows to transfer some constant time approximation algorithms for general graphs into random order streaming algorithms. We illustrate our technique by proving that in random order streams with…

Data Structures and Algorithms · Computer Science 2017-11-15 Pan Peng , Christian Sohler

The distinct elements problem is one of the fundamental problems in streaming algorithms --- given a stream of integers in the range $\{1,\ldots,n\}$, we wish to provide a $(1+\varepsilon)$ approximation to the number of distinct elements…

Data Structures and Algorithms · Computer Science 2019-01-07 Jarosław Błasiok

We show a dichotomy result for $p$-pass streaming algorithms for all CSPs and for up to polynomially many passes. More precisely, we prove that for any arity parameter $k$, finite alphabet $\Sigma$, collection $\mathcal{F}$ of $k$-ary…

Computational Complexity · Computer Science 2026-04-03 Yumou Fei , Dor Minzer , Shuo Wang

We study the problem of edit similarity joins, where given a set of strings and a threshold value $K$, we want to output all pairs of strings whose edit distances are at most $K$. Edit similarity join is a fundamental problem in data…

Databases · Computer Science 2017-10-10 Haoyu Zhang , Qin Zhang

Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the approximate pattern matching problem asks for computation of a particular \emph{distance} function between $P$ and every $m$-substring of $T$. We consider a…

Data Structures and Algorithms · Computer Science 2019-07-24 Jan Studený , Przemysław Uznański

Edit distance similarity search, also called approximate pattern matching, is a fundamental problem with widespread database applications. The goal of the problem is to preprocess $n$ strings of length $d$, to quickly answer queries $q$ of…

Data Structures and Algorithms · Computer Science 2020-07-10 Samuel McCauley

Approximating quantiles and distributions over streaming data has been studied for roughly two decades now. Recently, Karnin, Lang, and Liberty proposed the first asymptotically optimal algorithm for doing so. This manuscript complements…

Data Structures and Algorithms · Computer Science 2019-07-02 Nikita Ivkin , Edo Liberty , Kevin Lang , Zohar Karnin , Vladimir Braverman

In this paper we study the problem of finding $(\epsilon, \phi)$-expander decompositions of a graph in the streaming model, in particular for dynamic streams of edge insertions and deletions. The goal is to partition the vertex set so that…

Data Structures and Algorithms · Computer Science 2024-05-30 Yu Chen , Michael Kapralov , Mikhail Makarov , Davide Mazzali

Given a string $S$ over an alphabet $\Sigma$, the 'string indexing problem' is to preprocess $S$ to subsequently support efficient pattern matching queries, i.e., given a pattern string $P$ report all the occurrences of $P$ in $S$. In this…

Data Structures and Algorithms · Computer Science 2023-01-24 Philip Bille , Johannes Fischer , Inge Li Gørtz , Max Rishøj Pedersen , Tord Joakim Stordalen

We study streaming algorithms for the fundamental geometric problem of computing the cost of the Euclidean Minimum Spanning Tree (MST) on an $n$-point set $X \subset \mathbb{R}^d$. In the streaming model, the points in $X$ can be added and…

Data Structures and Algorithms · Computer Science 2022-12-14 Vincent Cohen-Addad , Xi Chen , Rajesh Jayaram , Amit Levi , Erik Waingarten