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Biomedical entity linking is the task of linking entity mentions in a biomedical document to referent entities in a knowledge base. Recently, many BERT-based models have been introduced for the task. While these models have achieved…

Computation and Language · Computer Science 2021-09-07 Tuan Lai , Heng Ji , ChengXiang Zhai

Understanding the meaning of text often involves reasoning about entities and their relationships. This requires identifying textual mentions of entities, linking them to a canonical concept, and discerning their relationships. These tasks…

Computation and Language · Computer Science 2019-12-04 Trapit Bansal , Pat Verga , Neha Choudhary , Andrew McCallum

Entity linking has recently been the subject of a significant body of research. Currently, the best performing approaches rely on trained mono-lingual models. Porting these approaches to other languages is consequently a difficult endeavor…

Computation and Language · Computer Science 2017-10-18 Diego Moussallem , Ricardo Usbeck , Michael Röder , Axel-Cyrille Ngonga Ngomo

In this work, we present a web application named DBLPLink, which performs entity linking over the DBLP scholarly knowledge graph. DBLPLink uses text-to-text pre-trained language models, such as T5, to produce entity label spans from an…

Computation and Language · Computer Science 2023-09-26 Debayan Banerjee , Arefa , Ricardo Usbeck , Chris Biemann

Disease name recognition and normalization, which is generally called biomedical entity linking, is a fundamental process in biomedical text mining. Recently, neural joint learning of both tasks has been proposed to utilize the mutual…

Computation and Language · Computer Science 2021-04-22 Shogo Ujiie , Hayate Iso , Shuntaro Yada , Shoko Wakamiya , Eiji Aramaki

Scientific documents contain complex multimodal structures, which makes evidence localization and scientific reasoning in Document Visual Question Answering particularly challenging. However, most existing benchmarks evaluate models only at…

Databases · Computer Science 2026-03-31 Wenhan Yu , Zhaoxi Zhang , Wang Chen , Guanqiang Qi , Weikang Li , Lei Sha , Deguo Xia , Jizhou Huang

An Entity Linking system aligns the textual mentions of entities in a text to their corresponding entries in a knowledge base. However, deploying a neural entity linking system for efficient real-time inference in production environments is…

Entity linking (EL) for biomedical text is typically benchmarked on English-only corpora with flat mentions, leaving the more realistic scenario of nested and multilingual mentions largely unexplored. We present our system for the BioNNE…

Computation and Language · Computer Science 2025-09-15 Chunyu Li , Xindi Zheng , Siqi Liu

Entity summarization aims at creating brief but informative descriptions of entities from knowledge graphs. While previous work mostly focused on traditional techniques such as clustering algorithms and graph models, we ask how to apply…

Computation and Language · Computer Science 2020-05-27 Dongjun Wei , Yaxin Liu , Fuqing Zhu , Liangjun Zang , Wei Zhou , Jizhong Han , Songlin Hu

Controllers for structured LM reasoning (e.g., Chain-of-Thought, self-consistency, and Tree-of-Thoughts) often entangle what to try next with how to execute it, exposing only coarse global knobs and yielding brittle, compute-inefficient,…

Artificial Intelligence · Computer Science 2025-10-07 Abhinav Madahar

Current systems of fine-grained entity typing use distant supervision in conjunction with existing knowledge bases to assign categories (type labels) to entity mentions. However, the type labels so obtained from knowledge bases are often…

Computation and Language · Computer Science 2016-02-18 Xiang Ren , Wenqi He , Meng Qu , Clare R. Voss , Heng Ji , Jiawei Han

Labeling data can be an expensive task as it is usually performed manually by domain experts. This is cumbersome for deep learning, as it is dependent on large labeled datasets. Active learning (AL) is a paradigm that aims to reduce…

Computation and Language · Computer Science 2021-11-05 Pieter Floris Jacobs , Gideon Maillette de Buy Wenniger , Marco Wiering , Lambert Schomaker

Literature analysis facilitates researchers to acquire a good understanding of the development of science and technology. The traditional literature analysis focuses largely on the literature metadata such as topics, authors, abstracts,…

Artificial Intelligence · Computer Science 2021-01-29 Linlin Hou , Ji Zhang , Ou Wu , Ting Yu , Zhen Wang , Zhao Li , Jianliang Gao , Yingchun Ye , Rujing Yao

Tables are among the most powerful and practical tools for organizing and working with data. Our motivation is to equip spreadsheet programs with smart assistance capabilities. We concentrate on one particular family of tables, namely,…

Information Retrieval · Computer Science 2017-08-30 Shuo Zhang , Krisztian Balog

We introduce RelNet: a new model for relational reasoning. RelNet is a memory augmented neural network which models entities as abstract memory slots and is equipped with an additional relational memory which models relations between all…

Computation and Language · Computer Science 2017-11-17 Trapit Bansal , Arvind Neelakantan , Andrew McCallum

Knowledge bases of entities and relations (either constructed manually or automatically) are behind many real world search engines, including those at Yahoo!, Microsoft, and Google. Those knowledge bases can be viewed as graphs with nodes…

Databases · Computer Science 2011-12-01 Lujun Fang , Anish Das Sarma , Cong Yu , Philip Bohannon

In this paper, we propose CHOLAN, a modular approach to target end-to-end entity linking (EL) over knowledge bases. CHOLAN consists of a pipeline of two transformer-based models integrated sequentially to accomplish the EL task. The first…

Computation and Language · Computer Science 2021-02-09 Manoj Prabhakar Kannan Ravi , Kuldeep Singh , Isaiah Onando Mulang' , Saeedeh Shekarpour , Johannes Hoffart , Jens Lehmann

We introduce GrapAL (Graph database of Academic Literature), a versatile tool for exploring and investigating a knowledge base of scientific literature, that was semi-automatically constructed using NLP methods. GrapAL satisfies a variety…

Databases · Computer Science 2019-05-21 Christine Betts , Joanna Power , Waleed Ammar

Question answering from semi-structured tables can be seen as a semantic parsing task and is significant and practical for pushing the boundary of natural language understanding. Existing research mainly focuses on understanding contents…

Artificial Intelligence · Computer Science 2021-06-08 Xiaoyi Ruan , Meizhi Jin , Jian Ma , Haiqin Yang , Lianxin Jiang , Yang Mo , Mengyuan Zhou

Table entailment, the binary classification task of finding if a sentence is supported or refuted by the content of a table, requires parsing language and table structure as well as numerical and discrete reasoning. While there is extensive…

Computation and Language · Computer Science 2020-10-06 Julian Martin Eisenschlos , Syrine Krichene , Thomas Müller