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We study the problem of edit similarity joins, where given a set of strings and a threshold value $K$, we want to output all pairs of strings whose edit distances are at most $K$. Edit similarity join is a fundamental problem in data…

Databases · Computer Science 2017-10-10 Haoyu Zhang , Qin Zhang

Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the…

Data Structures and Algorithms · Computer Science 2026-02-11 Diptarka Chakraborty , Rudrayan Kundu , Nidhi Purohit , Aravinda Kanchana Ruwanpathirana

A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…

Data Structures and Algorithms · Computer Science 2015-03-13 Alexander Tiskin

Strings are a natural representation of biological data such as DNA, RNA and protein sequences. The problem of finding a string that summarizes a set of sequences has direct application in relative compression algorithms for genome and…

Data Structures and Algorithms · Computer Science 2019-12-06 P. Mirabal , J. Abreu , D. Seco

Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…

Data Structures and Algorithms · Computer Science 2010-09-08 Philip Bille

Modern neural networks have greatly improved performance across speech recognition benchmarks. However, gains are often driven by frequent words with limited semantic weight, which can obscure meaningful differences in word error rate, the…

Computation and Language · Computer Science 2026-04-21 Lasse Borgholt , Jakob Havtorn , Christian Igel , Lars Maaløe , Zheng-Hua Tan

String constraint solving, and the underlying theory of word equations, are highly interesting research topics both for practitioners and theoreticians working in the wide area of satisfiability modulo theories. As string constraint solving…

Logic in Computer Science · Computer Science 2022-08-19 Joel D. Day , Adrian Kröger , Mitja Kulczynski , Florin Manea , Dirk Nowotka , Danny Bøgsted Poulsen

This paper introduces Paraconsistent-Lib, an open-source, easy-to-use Python library for building PAL2v algorithms in reasoning and decision-making systems. Paraconsistent-Lib is designed as a general-purpose library of PAL2v standard…

Several measures exist for string similarity, including notable ones like the edit distance and the indel distance. The former measures the count of insertions, deletions, and substitutions required to transform one string into another,…

Data Structures and Algorithms · Computer Science 2024-10-15 Sudatta Bhattacharya , Sanjana Dey , Elazar Goldenberg , Michal Koucký

In this paper we present $LCSk$++: a new metric for measuring the similarity of long strings, and provide an algorithm for its efficient computation. With ever increasing size of strings occuring in practice, e.g. large genomes of plants…

Data Structures and Algorithms · Computer Science 2019-08-27 Filip Pavetić , Goran Žužić , Mile Šikić

Real-time music alignment, also known as score following, is a fundamental MIR task with a long history and is essential for many interactive applications. Despite its importance, there has not been a unified open framework for comparing…

Sound · Computer Science 2025-10-14 Jiyun Park , Carlos Cancino-Chacón , Suhit Chiruthapudi , Juhan Nam

String constraint solving refers to solving combinatorial problems involving constraints over string variables. String solving approaches have become popular over the last years given the massive use of strings in different application…

Artificial Intelligence · Computer Science 2021-07-01 Roberto Amadini

We describe a substring search problem that arises in group presentation simplification processes. We suggest a two-level searching model: skip and match levels. We give two timestamp algorithms which skip searching parts of the text where…

Group Theory · Mathematics 2009-09-25 George Havas , Jin Xian Lian

The abelian pattern matching problem consists in finding all substrings of a text which are permutations of a given pattern. This problem finds application in many areas and can be solved in linear time by a naive sliding window approach.…

Data Structures and Algorithms · Computer Science 2018-03-08 Simone Faro , Arianna Pavone

Tasks that model the relation between pairs of tokens in a string are a vital part of understanding natural language. Such tasks, in general, require exhaustive pair-wise comparisons of tokens, thus having a quadratic runtime complexity in…

Computation and Language · Computer Science 2023-12-13 Tianyu Liu , Afra Amini , Mrinmaya Sachan , Ryan Cotterell

Analyzing patterns in data streams generated by network traffic, sensor networks, or satellite feeds is a challenge for systems in which the available storage is limited. In addition, real data is noisy, which makes designing data stream…

Data Structures and Algorithms · Computer Science 2017-11-15 Elena Grigorescu , Erfan Sadeqi Azer , Samson Zhou

Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time…

Discrete Mathematics · Computer Science 2020-02-05 Nathan Schaar , Vincent Froese , Rolf Niedermeier

String matching is the problem of finding all the substrings of a text which match a given pattern. It is one of the most investigated problems in computer science, mainly due to its very diverse applications in several fields. Recently,…

Data Structures and Algorithms · Computer Science 2017-07-04 Domenico Cantone , Simone Faro , Arianna Pavone

The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…

Data Structures and Algorithms · Computer Science 2011-01-31 Nieves R. Brisaboa , Rodrigo Cánovas , Miguel A. Martínez-Prieto , Gonzalo Navarro

Recent advances in large-margin classification of data residing in general metric spaces (rather than Hilbert spaces) enable classification under various natural metrics, such as string edit and earthmover distance. A general framework…

Machine Learning · Computer Science 2014-07-14 Lee-Ad Gottlieb , Aryeh Kontorovich , Robert Krauthgamer