Related papers: A barrier for further approximating Sorting By Tra…
We study $P(n,3)$, the size of the largest subset of the set of all permutations $S_n$ with minimum Kendall $\tau$-distance $3$. Using a combination of group theory and integer programming, we reduced the upper bound of $P(p,3)$ from…
The current paper investigates the bounded distance decoding (BDD) problem for ensembles of lattices whose generator matrices have sub-Gaussian entries. We first prove that, for these ensembles the BDD problem is NP-hard in the worst case.…
We study the complexity of the decision problem known as Permutation Pattern Matching, or PPM. The input of PPM consists of a pair of permutations $\tau$ (the `text') and $\pi$ (the `pattern'), and the goal is to decide whether $\tau$…
The reconstruction problem for permutations on $n$ elements from their erroneous patterns which are distorted by transpositions is presented in this paper. It is shown that for any $n \geq 3$ an unknown permutation is uniquely…
We study the variant of the Euclidean Traveling Salesman problem where instead of a set of points, we are given a set of lines as input, and the goal is to find the shortest tour that visits each line. The best known upper and lower bounds…
In this work, we consider a restricted case of the well studied Sorting by Block Interchanges problem. We put an upper bound k on the length of the blocks (substrings) to be interchanged at each step. We call the problem Sorting by k-Block…
We initiate the study of sorting permutations using prefix block-interchanges, which exchange any prefix of a permutation with another non-intersecting interval. The goal is to transform a given permutation into the identity permutation…
We address the problem of computing distances between rankings that take into account similarities between candidates. The need for evaluating such distances is governed by applications as diverse as rank aggregation, bioinformatics, social…
For several decades, much effort has been put into identifying classes of CNF formulas whose satisfiability can be decided in polynomial time. Classic results are the linear-time tractability of Horn formulas (Aspvall, Plass, and Tarjan,…
The search for similarity and dissimilarity measures on phylogenetic trees has been motivated by the computation of consensus trees, the search by similarity in phylogenetic databases, and the assessment of clustering results in…
Imagine that unlabelled tokens are placed on the edges of a graph, such that no two tokens are placed on incident edges. A token can jump to another edge if the edges having tokens remain independent. We study the problem of determining the…
Associate to each sequence $A$ of integers (intending to represent packet IDs) a sequence of positive integers of the same length ${\mathcal M}(A)$. The $i$'th entry of ${\mathcal M}(A)$ is the size (at time $i$) of the smallest buffer…
The Traveling Salesman Problem is one of the most studied problems in computational complexity and its approximability has been a long standing open question. Currently, the best known inapproximability threshold known is 220/219 due to…
A ternary permutation constraint satisfaction problem (CSP) is specified by a subset Pi of the symmetric group S_3. An instance of such a problem consists of a set of variables V and a set of constraints C, where each constraint is an…
We show that the problem of computing the distance of a given permutation from a subgroup $H$ of $S_n$ is in general NP-complete, even under the restriction that $H$ is elementary Abelian of exponent 2. The problem is shown to be…
We present a deterministic (1+sqrt(5))/2-approximation algorithm for the s-t path TSP for an arbitrary metric. Given a symmetric metric cost on n vertices including two prespecified endpoints, the problem is to find a shortest Hamiltonian…
Genomic distance between two genomes, i.e., the smallest number of genome rearrangements required to transform one genome into the other, is often used as a measure of evolutionary closeness of the genomes in comparative genomics studies.…
In this paper, we introduce plane permutations, i.e. pairs $\mathfrak{p}=(s,\pi)$ where $s$ is an $n$-cycle and $\pi$ is an arbitrary permutation, represented as a two-row array. Accordingly a plane permutation gives rise to three distinct…
Let $\Gamma$ be a Cayley graph of the permutation group generated by a transposition tree $T$ on $n$ vertices. In an oft-cited paper \cite{Akers:Krishnamurthy:1989} (see also \cite{Hahn:Sabidussi:1997}), it is shown that the diameter of the…
Given a graph $G$ and two spanning trees $T$ and $T'$ in $G$, Spanning Tree Reconfiguration asks whether there is a step-by-step transformation from $T$ to $T'$ such that all intermediates are also spanning trees of $G$, by exchanging an…