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The particle-hole map (PHM) is a tool to visualize electronic excitations, based on representations in a canonical orbital transition space. Introduced as an alternative to the transition density matrix, the PHM has a simple probabilistic…

Chemical Physics · Physics 2016-11-23 Yonghui Li , Carsten A. Ullrich

Stress, or pressure, is a central quantity in engineering and remains vital in molecular modelling. However, the commonly used virial stress tensor is invalid for an inhomogeneous fluid, which is essential in fluid dynamics and…

Chemical Physics · Physics 2026-01-13 E. R. Smith

Reference Expression Segmentation (RES) aims to segment image regions specified by referring expressions and has become popular with the rise of multimodal large models (MLLMs). While MLLMs excel in semantic understanding, their…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Jingchao Wang , Zhijian Wu , Dingjiang Huang , Yefeng Zheng , Hong Wang

Coarse graining (CG) enables the investigation of molecular properties for larger systems and at longer timescales than the ones attainable at the atomistic resolution. Machine learning techniques have been recently proposed to learn CG…

Computational Physics · Physics 2022-09-28 Eleonora Ricci , George Giannakopoulos , Vangelis Karkaletsis , Doros N. Theodorou , Niki Vergadou

Artificial neural network (ANN) potentials enable highly accurate atomistic simulations of complex materials at unprecedented scales. Despite their promise, training ANN potentials to represent intricate potential energy surfaces (PES) with…

Disordered Systems and Neural Networks · Physics 2025-11-11 In Won Yeu , Annika Stuke , Jon L. pez-Zorrilla , James M. Stevenson , David R. Reichman , Richard A. Friesner , Alexander Urban , Nongnuch Artrith

A new nine-dimensional potential energy surface (PES) and dipole moment surface (DMS) for silane have been generated using high-level \textit{ab initio} theory. The PES, CBS-F12$^{\,\mathrm{HL}}$, reproduces all four fundamental term values…

Chemical Physics · Physics 2018-08-17 Alec Owens , Sergei N. Yurchenko , Andrey Yachmenev , Walter Thiel

Machine-learning potentials (MLPs) have become important tools for modern molecular simulations. However, developing models that simultaneously achieve high accuracy and high computational efficiency remains a significant challenge. In this…

Chemical Physics · Physics 2026-02-17 Xinze Li , Ruitao Ma , Chen Qu , Dong H. Zhang , Qi Yu

Highly accurate potential energy surfaces are of key interest for the detailed understanding and predictive modeling of chemical systems. In recent years, several new types of force fields, which are based on machine learning algorithms and…

Chemical Physics · Physics 2019-12-10 Christoph Schran , Jörg Behler , Dominik Marx

Computational chemistry has become an important tool to predict and understand molecular properties and reactions. Even though recent years have seen a significant growth in new algorithms and computational methods that speed up quantum…

Chemical Physics · Physics 2023-07-26 Albert Thie , Maximilian F. S. J. Menger , Shirin Faraji

Machine Learning Interatomic Potentials (MLIPs) sometimes fail to reproduce the physical smoothness of the quantum potential energy surface (PES), leading to erroneous behavior in downstream simulations that standard energy and force…

Machine Learning · Computer Science 2026-02-05 Ryan Liu , Eric Qu , Tobias Kreiman , Samuel M. Blau , Aditi S. Krishnapriyan

Many real-world physics and engineering problems arise in geometrically complex domains discretized by meshes for numerical simulations. The nodes of these potentially irregular meshes naturally form point clouds whose limited tractability…

Machine Learning · Computer Science 2025-06-17 Shirin Hosseinmardi , Ramin Bostanabad

Within the MNPBEM toolbox, we show how to simulate electron energy loss spectroscopy (EELS) of plasmonic nanoparticles using a boundary element method approach. The methodology underlying our approach closely follows the concepts developed…

Mesoscale and Nanoscale Physics · Physics 2015-06-18 Ulrich Hohenester

Physics-based simulation of mesh based domains remains a challenging task. State-of-the-art techniques can produce realistic results but require expert knowledge. A major bottleneck in many approaches is the step of integrating a potential…

Graphics · Computer Science 2023-11-07 Oshri Halimi , Egor Larionov , Zohar Barzelay , Philipp Herholz , Tuur Stuyck

Data driven approaches have the potential to make modeling complex, nonlinear physical phenomena significantly more computationally tractable. For example, computational modeling of fracture is a core challenge where machine learning…

Machine Learning · Computer Science 2025-10-01 Erfan Hamdi , Emma Lejeune

Machine learning potentials (MLPs) trained on data from quantum-mechanics based first-principles methods can approach the accuracy of the reference method at a fraction of the computational cost. To facilitate efficient MLP-based molecular…

Materials Science · Physics 2021-08-17 Michael S. Chen , Tobias Morawietz , Hideki Mori , Thomas E. Markland , Nongnuch Artrith

Machine learning has emerged as a powerful tool in various fields, including computer vision, natural language processing, and speech recognition. It can unravel hidden patterns within large data sets and reveal unparalleled insights,…

Machine Learning · Computer Science 2024-05-24 Abdeldjalil Latrach , Mohamed Lamine Malki , Misael Morales , Mohamed Mehana , Minou Rabiei

We introduce the particle-hole map (PHM), a visualization tool to analyze electronic excitations in molecules in the time or frequency domain, to be used in conjunction with time-dependent density-functional theory (TDDFT) or other ab…

Chemical Physics · Physics 2015-10-15 Yonghui Li , Carsten A. Ullrich

We present a 3D isotropic ab initio three-body (para-H$_2$)$_3$ interaction potential energy surface (PES). The electronic structure calculations are carried out at the correlated coupled-cluster theory level, with single, double, and…

Chemical Physics · Physics 2025-06-05 Alexander Ibrahim , Pierre-Nicholas Roy

With the establishment of machine learning (ML) techniques in the scientific community, the construction of ML potential energy surfaces (ML-PES) has become a standard process in physics and chemistry. So far, improvements in the…

Chemical Physics · Physics 2024-07-23 Kai Töpfer , Luis Itza Vazquez-Salazar , Markus Meuwly

Molecular dynamics simulations provide a mechanistic description of molecules by relying on empirical potentials. The quality and transferability of such potentials can be improved leveraging data-driven models derived with machine learning…