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We present a fast general-purpose algorithm for high-throughput clustering of data "with a two dimensional organization". The algorithm is designed to be implemented with FPGAs or custom electronics. The key feature is a processing time…
Scientific applications are generating unprecedented volumes of data that overwhelm storage and transmission systems, posing significant challenges for the design of data management tools and scientific databases. Lossy compression has…
Network compression techniques have become increasingly important in recent years because the loads of Deep Neural Networks (DNNs) are heavy for edge devices in real-world applications. While many methods compress neural network parameters,…
This paper introduces open-source computational fluid dynamics software named open computational fluid dynamic code for scientific computation with graphics processing unit (GPU) system (OpenCFD-SCU), developed by the authors for direct…
Storing and archiving data produced by next-generation sequencing (NGS) is a huge burden for research institutions. Reference-based compression algorithms are effective in dealing with these data. Our work focuses on compressing FASTQ…
It was estimated that the world produced $59 ZB$ ($5.9 \times 10^{13} GB$) of data in 2020, resulting in the enormous costs of both data storage and transmission. Fortunately, recent advances in deep generative models have spearheaded a new…
Iterative methods on irregular grids have been used widely in all areas of comptational science and engineering for solving partial differential equations with complex geometry. They provide the flexibility to express complex shapes with…
Data compression and decompression have become vital components of big-data applications to manage the exponential growth in the amount of data collected and stored. Furthermore, big-data applications have increasingly adopted GPUs due to…
High-throughput physics experiments require efficient and increasingly complex real-time processing. This paper presents a modular, software-defined platform combining high-bandwidth PCIe digitizers with consumer GPUs to achieve continuous,…
Extreme-scale cosmological simulations have been widely used by today's researchers and scientists on leadership supercomputers. A new generation of error-bounded lossy compressors has been used in workflows to reduce storage requirements…
We explore an error-bounded lossy compression approach for reducing scientific data associated with 2D/3D unstructured meshes. While existing lossy compressors offer a high compression ratio with bounded error for regular grid data,…
New directions in computing and algorithms has lead to some new applications that have tolerance to imprecision. Although, These applications are creating large volumes of data which exceeds the capability of today's computing systems.…
High-performance learned image compression codecs require flexible probability models to fit latent representations. Gaussian Mixture Models (GMMs) were proposed to satisfy this demand, but suffer from a significant runtime performance…
Modern GPUs are equipped with tensor cores (TCs) that are commonly used for matrix multiplication in artificial intelligence workloads. However, because they have high computational throughput, they can lead to significant performance gains…
Physics experiments produce enormous amount of raw data, counted in petabytes per day. Hence, there is large effort to reduce this amount, mainly by using some filters. The situation can be improved by additionally applying some data…
The LHC experiments are designed to detect large amount of physics events produced with a very high rate. Considering the future upgrades, the data acquisition rate will become even higher and new computing paradigms must be adopted for…
As parallel computing trends towards the exascale, scientific data produced by high-fidelity simulations are growing increasingly massive. For instance, a simulation on a three-dimensional spatial grid with 512 points per dimension that…
Heterogeneous computing integrates diverse processing elements, such as CPUs, GPUs, and FPGAs, within a single system, aiming to leverage the strengths of each architecture to optimize performance and energy consumption. In this context,…
Compression is an efficient way to relieve the tremendous communication overhead of federated learning (FL) systems. However, for the existing works, the information loss under compression will lead to unexpected model/gradient deviation…
Molecular similarity search has been widely used in drug discovery to identify structurally similar compounds from large molecular databases rapidly. With the increasing size of chemical libraries, there is growing interest in the efficient…