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Related papers: Uni-QSAR: an Auto-ML Tool for Molecular Property P…

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LIDAR 3D object detection is one of the important tasks for autonomous vehicles. Ensuring that this task operates in real-time is crucial. Toward this, model quantization can be used to accelerate the runtime. However, directly applying…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Ninnart Fuengfusin , Keisuke Yoneda , Naoki Suganuma

Predicting molecular properties (e.g., atomization energy) is an essential issue in quantum chemistry, which could speed up much research progress, such as drug designing and substance discovery. Traditional studies based on density…

Computational Physics · Physics 2019-08-20 Chengqiang Lu , Qi Liu , Chao Wang , Zhenya Huang , Peize Lin , Lixin He

Explainable ML for molecular toxicity prediction is a promising approach for efficient drug development and chemical safety. A predictive ML model of toxicity can reduce experimental cost and time while mitigating ethical concerns by…

Quantitative Methods · Quantitative Biology 2022-04-15 Bhanushee Sharma , Vijil Chenthamarakshan , Amit Dhurandhar , Shiranee Pereira , James A. Hendler , Jonathan S. Dordick , Payel Das

Designing accurate deep learning models for molecular property prediction plays an increasingly essential role in drug and material discovery. Recently, due to the scarcity of labeled molecules, self-supervised learning methods for learning…

Biomolecules · Quantitative Biology 2022-06-08 Han Li , Dan Zhao , Jianyang Zeng

Molecular property prediction is essential for drug discovery. In recent years, deep learning methods have been introduced to this area and achieved state-of-the-art performances. However, most of existing methods ignore the intrinsic…

Biomolecules · Quantitative Biology 2022-11-04 Yuancheng Sun , Yimeng Chen , Weizhi Ma , Wenhao Huang , Kang Liu , Zhiming Ma , Wei-Ying Ma , Yanyan Lan

Biochemical reaction models describing subcellular processes generally come with a large uncertainty. To be able to account for this during the modeling process, we have developed the R-package UQSA, performing uncertainty quantification…

Quantitative Methods · Quantitative Biology 2025-04-08 Andrei Kramer , Federica Milinanni , Jeanette Hellgren Kotaleski , Pierre Nyquist , Alexandra Jauhiainen , Olivia Eriksson

Quantum Machine Learning (QML) is an exciting tool that has received significant recent attention due in part to advances in quantum computing hardware. While there is currently no formal guarantee that QML is superior to classical ML for…

High Energy Physics - Phenomenology · Physics 2023-03-22 Sulaiman Alvi , Christian Bauer , Benjamin Nachman

Tool-use capability is a fundamental component of LLM agents, enabling them to interact with external systems through structured function calls. However, existing research exhibits inconsistent interaction representations, largely overlooks…

Artificial Intelligence · Computer Science 2026-05-26 Yijuan Liang , Xinghao Chen , Yifan Ge , Ziyi Wu , Hao Wu , Changyu Zeng , Wei Xing , Xiaoyu Shen

Digital sensing faces challenges in developing sustainable methods to extend the applicability of customized e-noses to complex body odor volatilome (BOV). To address this challenge, we developed MORE-ML, a computational framework that…

The ongoing energy crisis has underscored the urgent need for energy-efficient materials with high energy utilization efficiency, prompting a surge in research into organic compounds due to their environmental compatibility, cost-effective…

Chemical Physics · Physics 2025-07-24 Qi Ou , Hongshuai Wang , Minyang Zhuang , Shangqian Chen , Lele Liu , Ning Wang , Zhifeng Gao

Activity cliffs, which refer to pairs of molecules that are structurally similar but show significant differences in their potency, can lead to model representation collapse and make the model challenging to distinguish them. Our research…

Computer Vision and Pattern Recognition · Computer Science 2024-09-20 Zhixiang Cheng , Hongxin Xiang , Pengsen Ma , Li Zeng , Xin Jin , Xixi Yang , Jianxin Lin , Yang Deng , Bosheng Song , Xinxin Feng , Changhui Deng , Xiangxiang Zeng

Machine learning, data mining and artificial intelligence (AI) based methods have been used to determine the relations between chemical structure and biological activity, called quantitative structure activity relationships (QSARs) for the…

Artificial Intelligence · Computer Science 2009-10-06 Om Prasad Patri , Amit Kumar Mishra

Molecular property prediction is gaining increasing attention due to its diverse applications. One task of particular interests and importance is to predict quantum chemical properties without 3D equilibrium structures. This is practically…

Machine Learning · Computer Science 2021-06-17 Meng Liu , Cong Fu , Xuan Zhang , Limei Wang , Yaochen Xie , Hao Yuan , Youzhi Luo , Zhao Xu , Shenglong Xu , Shuiwang Ji

Collecting labeled data for many important tasks in chemoinformatics is time consuming and requires expensive experiments. In recent years, machine learning has been used to learn rich representations of molecules using large scale…

Machine Learning · Computer Science 2022-05-20 A. Tevosyan , L. Khondkaryan , H. Khachatrian , G. Tadevosyan , L. Apresyan , N. Babayan , H. Stopper , Z. Navoyan

Simulations of biological macromolecules play an important role in understanding the physical basis of a number of complex processes such as protein folding. Even with increasing computational power and evolution of specialized…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-18 Hyungro Lee , Heng Ma , Matteo Turilli , Debsindhu Bhowmik , Shantenu Jha , Arvind Ramanathan

Molecular Representation Learning (MRL) has proven impactful in numerous biochemical applications such as drug discovery and enzyme design. While Graph Neural Networks (GNNs) are effective at learning molecular representations from a 2D…

Quantum machine learning (QML) is a promising early use case for quantum computing. There has been progress in the last five years from theoretical studies and numerical simulations to proof of concepts. Use cases demonstrated on…

Quantum Physics · Physics 2024-04-30 Daniel Goldsmith , M M Hassan Mahmud

The rise of machine learning (ML) has created an explosion in the potential strategies for using data to make scientific predictions. For physical scientists wishing to apply ML strategies to a particular domain, it can be difficult to…

Perovskite Quantum Dots (PQDs) have a promising future for several applications due to their unique properties. This study investigates the effectiveness of Machine Learning (ML) in predicting the size, absorbance (1S abs) and…

Materials Science · Physics 2024-06-25 Mehmet Sıddık Çadırcı , Musa Çadırcı

The analysis of tabular datasets is highly prevalent both in scientific research and real-world applications of Machine Learning (ML). Unlike many other ML tasks, Deep Learning (DL) models often do not outperform traditional methods in this…

Machine Learning · Computer Science 2024-08-28 Assaf Shmuel , Oren Glickman , Teddy Lazebnik