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This paper explores practical aspects of using a high-level functional language for GPU-based arithmetic on ``midsize'' integers. By this we mean integers of up to about a quarter million bits, which is sufficient for most practical…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-24 Cosmin E. Oancea , Stephen M. Watt

This paper presents efforts to improve the hierarchical parallelism of a two scale simulation code. Two methods to improve the GPU parallel performance were developed and compared. The first used the NVIDIA Multi-Process Service and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-15 Jacob Merson , Mark S. Shephard

We present a unified programming model for heterogeneous computing systems. Such systems integrate multiple computing accelerators and memory units to deliver higher performance than CPU-centric systems. Although heterogeneous systems have…

Emerging Technologies · Computer Science 2024-04-18 Zixuan Wang , Jishen Zhao

Hardware heterogeneity is here to stay for high-performance computing. Large-scale systems are currently equipped with multiple GPU accelerators per compute node and are expected to incorporate more specialized hardware. This shift in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-09 Polykarpos Thomadakis , Nikos Chrisochoides

The first associations to software sustainability might be the existence of a continuous integration (CI) framework; the existence of a testing framework composed of unit tests, integration tests, and end-to-end tests; and also the…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-19 Terry Cojean , Yu-Hsiang "Mike" Tsai , Hartwig Anzt

HPC-based applications often have complex workflows with many software dependencies that hinder their portability on contemporary HPC architectures. In addition, these applications often require extraordinary efforts to deploy and execute…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-12-14 Sameh Abdulah , Jorge Ejarque , Omar Marzouk , Hatem Ltaief , Ying Sun , Marc G. Genton , Rosa M. Badia , David E. Keyes

Since the advent of parallel algorithms in the C++17 Standard Template Library (STL), the STL has become a viable framework for creating performance-portable applications. Given multiple existing implementations of the parallel algorithms,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-12 Ruben Laso , Diego Krupitza , Sascha Hunold

Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scientific computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-10 Mehmet Deveci , Christian Trott , Sivasankaran Rajamanickam

The cryosphere plays a significant role in Earth's climate system. Therefore, an accurate simulation of sea ice is of great importance to improve climate projections. To enable higher resolution simulations, graphics processing units (GPUs)…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-29 Robert Jendersie , Christian Lessig , Thomas Richter

We evaluate the second-generation Intel Xeon Phi coprocessor based on the Intel Many Integrated Core (MIC) architecture, aka the Knights Landing or KNL, for simulating neutrino oscillations in (core-collapse) supernovae. For this purpose we…

Computational Physics · Physics 2019-12-24 Vahid Noormofidi , Susan R. Atlas , Huaiyu Duan

Heterogeneous computing is the strategy of deploying multiple types of processing elements within a single workflow, and allowing each to perform the tasks to which is best suited. To fully harness the power of heterogeneity, we want to be…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-03 Nikolaos Mavrogeorgis

We present an ultrafast opacity calculator that we name HELIOS-K. It takes a line list as an input, computes the shape of each spectral line and provides an option for grouping an enormous number of lines into a manageable number of bins.…

Earth and Planetary Astrophysics · Physics 2015-08-19 Simon L. Grimm , Kevin Heng

Heterogeneous computing is emerging as a mandatory requirement for power-efficient system design. With this aim, modern heterogeneous platforms like Zynq All-Programmable SoC, that integrates ARM-based SMP and programmable logic, have been…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-08-28 Daniel Jiménez-González , Carlos Álvarez , Antonio Filgueras , Xavier Martorell , Jan Langer , Juanjo Noguera , Kees Vissers

High-order gas-kinetic scheme (HGKS) has become a workable tool for the direct numerical simulation (DNS) of turbulence. In this paper, to accelerate the computation, HGKS is implemented with the graphical processing unit (GPU) using the…

Numerical Analysis · Mathematics 2023-01-25 Yuhang Wang , Guiyu Cao , Liang Pan

The non-orthogonal local submatrix method applied to electronic-structure based molecular dynamics simulations is shown to exceed 1.1 EFLOP/s in FP16/FP32 mixed floating-point arithmetic when using 4,400 NVIDIA A100 GPUs of the Perlmutter…

Computational Physics · Physics 2022-06-08 Robert Schade , Tobias Kenter , Hossam Elgabarty , Michael Lass , Thomas D. Kühne , Christian Plessl

This Article presents two optimized multi-GPU algorithms for Fock matrix construction, building on the work of Ufimtsev et al. and Barca et al. The novel algorithms, opt-UM and opt-Brc, introduce significant enhancements, including improved…

Computational Physics · Physics 2024-08-01 Elise Palethorpe , Ryan Stocks , Giuseppe M. J. Barca

We introduce an extension to the AthenaK code for general-relativistic magnetohydrodynamics (GRMHD) in dynamical spacetimes using a 3+1 conservative Eulerian formulation. Like the fixed-spacetime GRMHD solver, we use standard finite-volume…

High Energy Astrophysical Phenomena · Physics 2025-01-15 Jacob Fields , Hengrui Zhu , David Radice , James M. Stone , William Cook , Sebastiano Bernuzzi , Boris Daszuta

We discuss practical methods to ensure near wirespeed performance from clusters with either one or two Intel(R) Omni-Path host fabric interfaces (HFI) per node, and Intel(R) Xeon Phi(TM) 72xx (Knight's Landing) processors, and using the…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-15 Peter Boyle , Michael Chuvelev , Guido Cossu , Christopher Kelly , Christoph Lehner , Lawrence Meadows

We have developed the astrophysical simulation code XFLAT to study neutrino oscillations in supernovae. XFLAT is designed to utilize multiple levels of parallelism through MPI, OpenMP, and SIMD instructions (vectorization). It can run on…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-12 Vahid Noormofidi , Susan R. Atlas , Huaiyu Duan

The ExaNeSt and EuroExa H2020 EU-funded projects aim to design and develop an exascale ready computing platform prototype based on low-energy-consumption ARM64 cores and FPGA accelerators. We participate in the application-driven design of…

Instrumentation and Methods for Astrophysics · Physics 2018-12-04 David Goz , Sara Bertocco , Luca Tornatore , Giuliano Taffoni