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We present an efficient, linear-scaling implementation for building the (screened) Hartree-Fock exchange (HFX) matrix for periodic systems within the framework of numerical atomic orbital (NAO) basis functions. Our implementation is based…

Computational Physics · Physics 2020-09-29 Peize Lin , Xinguo Ren , Lixin He

The first generation of exascale systems will include a variety of machine architectures, featuring GPUs from multiple vendors. As a result, many developers are interested in adopting portable programming models to avoid maintaining…

Performance · Computer Science 2023-10-26 Esteban M. Rangel , S. John Pennycook , Adrian Pope , Nicholas Frontiere , Zhiqiang Ma , Varsha Madananth

General Matrix Multiplication (GEMM) is a critical operation underpinning a wide range of applications in high-performance computing (HPC) and artificial intelligence (AI). The emergence of hardware optimized for low-precision arithmetic…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-21 Qiao Zhang , Rabab Alomairy , Dali Wang , Zhuowei Gu , Qinglei Cao

Quantum computers must operate in concert with classical computers to deliver on the promise of quantum advantage for practical problems. To achieve that, it is important to understand how quantum and classical computing can interact…

We present results of a performance study of an astrophysical radiation hydrodynamics code, V2D, on the Arm-based A64FX processor developed by Fujitsu. The code solves sparse linear systems, a task for which the A64FX architecture should be…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-28 Dennis C. Smolarski , F. Douglas Swesty , Alan C. Calder

As an important goal of high-performance computing, the concept of performance portability has been around for many years. As the failure of Moore's Law, it is no longer feasible to improve computer performance by simply increasing the…

Hardware Architecture · Computer Science 2023-08-29 Weifeng Liu , Linping Wu , Xiaowen Xu , Yuren Wang

We introduce CORTEX, an algorithmic framework designed for large-scale brain simulation. Leveraging the computational capacity of the Fugaku Supercomputer, CORTEX maximizes available problem size and processing performance. Our primary…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-07 Tianxiang Lyu , Mitsuhisa Sato , Shigeki Aoki , Ryutaro Himeno , Zhe Sun

This living paper reviews the present High Performance Computing (HPC) capabilities of the Tinker-HP molecular modeling package. We focus here on the reference, double precision, massively parallel molecular dynamics engine present in…

Mathematical Software · Computer Science 2024-01-11 Luc-Henri Jolly , Alejandro Duran , Louis Lagardère , Jay W. Ponder , Pengyu Ren , Jean-Philip Piquemal

Asynchronous Many-task (AMT) runtime systems have gained increasing acceptance in the HPC community due to the performance improvements offered by fine-grained tasking runtime systems. At the same time, C++ standardization efforts are…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-09 Tianyi Zhang , Shahrzad Shirzad , Patrick Diehl , R. Tohid , Weile Wei , Hartmut Kaiser

Heterogeneous systems are becoming more common on High Performance Computing (HPC) systems. Even using tools like CUDA and OpenCL it is a non-trivial task to obtain optimal performance on the GPU. Approaches to simplifying this task include…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-01-11 Marek Blazewicz , Steven R. Brandt , Peter Diener , David M. Koppelman , Krzysztof Kurowski , Frank Löffler , Erik Schnetter , Jian Tao

Reactive molecular dynamics simulations are computationally demanding. Reaching spatial and temporal scales where interesting scientific phenomena can be observed requires efficient and scalable implementations on modern hardware. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-26 Hasan Metin Aktulga , Christopher Knight , Paul Coffman , Kurt A. O'Hearn , Tzu-Ray Shan , Wei Jiang

The hardware diversity in leadership-class computing facilities, alongside the immense performance boosts from today's GPUs when computing in lower precision, incentivizes scientific HPC workflows to adopt mixed-precision algorithms and…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-06 Sreeram Venkat , Kasia Swirydowicz , Noah Wolfe , Omar Ghattas

We present direct astrophysical N-body simulations with up to a few million bodies using our parallel MPI/CUDA code on large GPU clusters in China, Ukraine and Germany, with different kinds of GPU hardware. These clusters are directly…

Instrumentation and Methods for Astrophysics · Physics 2013-12-09 P. Berczik , R. Spurzem , L. Wang , S. Zhong , O. Veles , I. Zinchenko , S. Huang , M. Tsai , G. Kennedy , S. Li , L. Naso , C. Li

Electrical power requirements will be a constraint on the future growth of Distributed High Throughput Computing (DHTC) as used by High Energy Physics. Performance-per-watt is a critical metric for the evaluation of computer architectures…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-14 David Abdurachmanov , Brian Bockelman , Peter Elmer , Giulio Eulisse , Robert Knight , Shahzad Muzaffar

While parallelism remains the main source of performance, architectural implementations and programming models change with each new hardware generation, often leading to costly application re-engineering. Most tools for performance…

Programming Languages · Computer Science 2022-07-04 William S. Moses , Ivan R. Ivanov , Jens Domke , Toshio Endo , Johannes Doerfert , Oleksandr Zinenko

The High Energy Physics (HEP) experiments, such as those at the Large Hadron Collider (LHC), traditionally consume large amounts of CPU cycles for detector simulations and data analysis, but rarely use compute accelerators such as GPUs. As…

High Energy Physics - Experiment · Physics 2022-03-17 Zhihua Dong , Heather Gray , Charles Leggett , Meifeng Lin , Vincent R. Pascuzzi , Kwangmin Yu

We present our experience with the modernization on the GR-MHD code BHAC, aimed at improving its novel hybrid (MPI+OpenMP) parallelization scheme. In doing so, we showcase the use of performance profiling tools usable on x86 (Intel-based)…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-30 Salvatore Cielo , Oliver Porth , Luigi Iapichino , Anupam Karmakar , Hector Olivares , Chun Xia

A universal quantum computer can simulate diverse quantum systems, with electronic structure for chemistry offering challenging problems for practical use cases around the hundred-qubit mark. While current quantum processors have reached…

Legacy codes in computational science and engineering have been very successful in providing essential functionality to researchers. However, they are not capable of exploiting the massive parallelism provided by emerging heterogeneous…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-18 Davor Davidović , Diego Fabregat-Traver , Markus Höhnerbach , Edoardo di Napoli

Hardware technological advances are struggling to match scientific ambition, and a key question is how we can use the transistors that we already have more effectively. This is especially true for HPC, where the tendency is often to throw…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-11 Nick Brown