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Trace reconstruction considers the task of recovering an unknown string $x \in \{0,1\}^n$ given a number of independent "traces", i.e., subsequences of $x$ obtained by randomly and independently deleting every symbol of $x$ with some…

Probability · Mathematics 2022-03-16 Elena Grigorescu , Madhu Sudan , Minshen Zhu

Permutation codes in the Ulam metric, which can correct multiple deletions, have been investigated extensively recently. In this work, we are interested in the maximum size of permutation codes in the Ulam metric and aim to design…

Information Theory · Computer Science 2024-12-11 Shuche Wang , The Nguyen , Yeow Meng Chee , Van Khu Vu

With distributed computing and mobile applications becoming ever more prevalent, synchronizing diverging replicas of the same data is a common problem. Reconciliation -- bringing two replicas of the same data structure as close as possible…

Information Theory · Computer Science 2022-08-10 Elod P. Csirmaz , Laszlo Csirmaz

We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…

Information Theory · Computer Science 2015-02-23 Wael Halbawi , Matthew Thill , Babak Hassibi

In the trace reconstruction problem, an unknown bit string ${\bf x}\in\{0,1 \}^n$ is sent through a deletion channel where each bit is deleted independently with some probability $q\in(0,1)$, yielding a contracted string $\widetilde{\bf…

Probability · Mathematics 2019-06-10 Nina Holden , Russell Lyons

The explosion in the volumes of data being stored online has resulted in distributed storage systems transitioning to erasure coding based schemes. Yet, the codes being deployed in practice are fairly short. In this work, we address what we…

Information Theory · Computer Science 2016-09-22 Parikshit Gopalan , Guangda Hu , Swastik Kopparty , Shubhangi Saraf , Carol Wang , Sergey Yekhanin

The goal of the trace reconstruction problem is to recover a string $x\in\{0,1\}^n$ given many independent {\em traces} of $x$, where a trace is a subsequence obtained from deleting bits of $x$ independently with some given probability…

Information Theory · Computer Science 2024-01-30 Kuan Cheng , Elena Grigorescu , Xin Li , Madhu Sudan , Minshen Zhu

Existing gradient coding schemes introduce identical redundancy across the coordinates of gradients and hence cannot fully utilize the computation results from partial stragglers. This motivates the introduction of diverse redundancies…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-21 Qi Wang , Ying Cui , Chenglin Li , Junni Zou , Hongkai Xiong

Distributed storage systems need to store data redundantly in order to provide some fault-tolerance and guarantee system reliability. Different coding techniques have been proposed to provide the required redundancy more efficiently than…

Information Theory · Computer Science 2016-11-15 Lluis Pamies-Juarez , Henk D. L. Hollmann , Frédérique Oggier

The penalty incurred by imposing a finite delay constraint in lossless source coding of a memoryless source is investigated. It is well known that for the so-called block-to-variable and variable-to-variable codes, the redundancy decays at…

Information Theory · Computer Science 2016-11-17 Ofer Shayevitz , Eado Meron , Meir Feder , Ram Zamir

In distributed storage systems reliability is achieved through redundancy stored at different nodes in the network. Then a data collector can reconstruct source information even though some nodes fail. To maintain reliability, an autonomous…

Information Theory · Computer Science 2013-03-26 Majid Gerami , Ming Xiao , Mikael Skoglund , Kenneth W. Shum , Dengsheng Lin

Codes in the Damerau--Levenshtein metric have been extensively studied recently owing to their applications in DNA-based data storage. In particular, Gabrys, Yaakobi, and Milenkovic (2017) designed a length-$n$ code correcting a single…

Information Theory · Computer Science 2023-06-30 Shuche Wang , Van Khu Vu , Vincent Y. F. Tan

The number of zeros and the number of ones in a binary string are referred to as the composition of the string, and the prefix-suffix compositions of a string are a multiset formed by the compositions of the prefixes and suffixes of all…

Information Theory · Computer Science 2025-03-18 Zitan Chen

In this work, we study linear error-correcting codes against adversarial insertion-deletion (indel) errors. While most constructions for the indel model are nonlinear, linear codes offer compact representations, efficient encoding, and…

Information Theory · Computer Science 2025-10-01 Roee Gross , Roni Con , Eitan Yaakobi

We construct deletion error-correcting codes in the oblivious model, where errors are adversarial but oblivious to the encoder's randomness. Oblivious errors bridge the gap between the adversarial and random error models, and are motivated…

Information Theory · Computer Science 2025-06-24 Roni Con , Ray Li

Fractional repetition (FR) codes are a class of repair efficient erasure codes that can recover a failed storage node with both optimal repair bandwidth and complexity. In this paper, we study the minimum distance of FR codes, which is the…

Information Theory · Computer Science 2020-05-15 Bing Zhu , Kenneth W. Shum , Weiping Wang , Jianxin Wang

Data storage applications require erasure-correcting codes with prescribed sets of dependencies between data symbols and redundant symbols. The most common arrangement is to have $k$ data symbols and $h$ redundant symbols (that each depends…

Information Theory · Computer Science 2016-05-10 Guangda Hu , Sergey Yekhanin

The efficiency of a code is estimated by its redundancy $R$, while the complexity of a code is estimated by its average delay $\bar N$. In this work we construct word-based codes, for which $R \lesssim \bar N^{-5/3}$. Therefore, word-based…

Information Theory · Computer Science 2007-12-04 G. L. Khodak

We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…

Data Structures and Algorithms · Computer Science 2007-05-23 Ming-Yang Kao , Manan Sanghi , Robert Schweller

Regenerating codes are a class of codes proposed for providing reliability of data and efficient repair of failed nodes in distributed storage systems. In this paper, we address the fundamental problem of handling errors and erasures during…

Information Theory · Computer Science 2015-03-20 K. V. Rashmi , Nihar B. Shah , Kannan Ramchandran , P. Vijay Kumar