English
Related papers

Related papers: Lossy Compressor preserving variant calling throug…

200 papers

The Burrows-Wheeler Transform (BWT) is among the most influential discoveries in text compression and DNA storage. It is a reversible preprocessing step that rearranges an $n$-letter string into runs of identical characters (by exploiting…

Data Structures and Algorithms · Computer Science 2018-12-06 Sandip Sinha , Omri Weinstein

In this paper we consider the lossy compression of a binary symmetric source. We present a scheme that provides a low complexity lossy compressor with near optimal empirical performance. The proposed scheme is based on b-reduced…

Information Theory · Computer Science 2016-11-18 Alfredo Braunstein , Farbod Kayhan , Riccardo Zecchina

The Burrows-Wheeler Transform (BWT) serves as the basis for many important sequence indexes. On very large datasets (e.g. genomic databases), classical BWT construction algorithms are often infeasible because they usually need to have the…

Data Structures and Algorithms · Computer Science 2025-09-24 Jannik Olbrich

Error-bounded lossy compression is a critical technique for significantly reducing scientific data volumes. With ever-emerging heterogeneous high-performance computing (HPC) architecture, GPU-accelerated error-bounded compressors (such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-07 Jiannan Tian , Sheng Di , Xiaodong Yu , Cody Rivera , Kai Zhao , Sian Jin , Yunhe Feng , Xin Liang , Dingwen Tao , Franck Cappello

With the rapid growing of data and number of applications, there is a crucial need of dictionary based reversible transformation techniques to increase the efficiency of the compression algorithms and hence contribute towards the…

Information Theory · Computer Science 2014-03-20 R. R. Baruah , V. Deka , M. P. Bhuyan

Many scientific codes and instruments generate large amounts of floating-point data at high rates that must be compressed before they can be stored. Typically, only lossy compression algorithms deliver high-enough compression ratios.…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-31 Alex Fallin , Nathaniel Gorski , Tripti Agarwal , Bei Wang , Ganesh Gopalakrishnan , Martin Burtscher

The efficacy of Large Language Models (LLMs) in long-context tasks is often hampered by the substantial memory footprint and computational demands of the Key-Value (KV) cache. Current compression strategies, including token eviction and…

Computation and Language · Computer Science 2025-07-29 Runchao Li , Yao Fu , Mu Sheng , Xianxuan Long , Haotian Yu , Pan Li

The paper introduces a new lossless, highly robust compression algorithm that similar with LZW algorithm, yet the algorithm discards dictionary processing and uses irregular sequences with massive, random information instead. Then the paper…

Signal Processing · Electrical Eng. & Systems 2020-06-24 Rui Zhu

Compressing large language models (LLMs) for deployment on commodity GPUs remains challenging: conventional scalar quantization is limited to fixed bit-widths (e.g., 8/4/3-bit), offers only a few discrete compression points, and typically…

Machine Learning · Computer Science 2026-05-07 Ye Qiao , Yian Wang , Zhiheng Chen , Hyoukjun Kwon , Sitao Huang

The large memory requirements of deep neural networks limit their deployment and adoption on many devices. Model compression methods effectively reduce the memory requirements of these models, usually through applying transformations such…

Machine Learning · Computer Science 2017-11-15 Brandon Reagen , Udit Gupta , Robert Adolf , Michael M. Mitzenmacher , Alexander M. Rush , Gu-Yeon Wei , David Brooks

In order to evaluate, validate, and refine the design of new quantum algorithms or quantum computers, researchers and developers need methods to assess their correctness and fidelity. This requires the capabilities of quantum circuit…

Quantum Physics · Physics 2018-11-16 Xin-Chuan Wu , Sheng Di , Franck Cappello , Hal Finkel , Yuri Alexeev , Frederic T. Chong

Lossy compressors are increasingly adopted in scientific research, tackling volumes of data from experiments or parallel numerical simulations and facilitating data storage and movement. In contrast with the notion of entropy in lossless…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-16 Robert Underwood , Julie Bessac , David Krasowska , Jon C. Calhoun , Sheng Di , Franck Cappello

Scientific applications are generating unprecedented volumes of data that overwhelm storage and transmission systems, posing significant challenges for the design of data management tools and scientific databases. Lossy compression has…

Graphics · Computer Science 2026-04-09 Yuxiao Li , Mingze Xia , Xin Liang , Bei Wang , Hanqi Guo

The application of diffusion transformers is suffering from their significant inference costs. Recently, feature caching has been proposed to solve this problem by reusing features from previous timesteps, thereby skipping computation in…

This paper outlines an end-to-end optimized lossy image compression framework using diffusion generative models. The approach relies on the transform coding paradigm, where an image is mapped into a latent space for entropy coding and, from…

Image and Video Processing · Electrical Eng. & Systems 2024-01-03 Ruihan Yang , Stephan Mandt

We develop a simple and elegant method for lossless compression using latent variable models, which we call 'bits back with asymmetric numeral systems' (BB-ANS). The method involves interleaving encode and decode steps, and achieves an…

Machine Learning · Computer Science 2021-04-23 James Townsend

This paper presents a new solution to address the challenge of increasing memory usage in high-performance computing simulations of Lattice-Bolzmann or Finite-Volume schemes.Our approach utilises a lossy compression scheme based on the…

Hardware Architecture · Computer Science 2023-02-21 Clément Flint , Philippe Helluy

Time series data compression is emerging as an important problem with the growth in IoT devices and sensors. Due to the presence of noise in these datasets, lossy compression can often provide significant compression gains without impacting…

Signal Processing · Electrical Eng. & Systems 2020-01-14 Shubham Chandak , Kedar Tatwawadi , Chengtao Wen , Lingyun Wang , Juan Aparicio , Tsachy Weissman

Full-state quantum circuit simulation requires exponentially increased memory size to store the state vector as the number of qubits scales, presenting significant limitations in classical computing systems. Our paper introduces BMQSim, a…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-21 Boyuan Zhang , Bo Fang , Fanjiang Ye , Yida Gu , Nathan Tallent , Guangming Tan , Dingwen Tao

Error-controlled lossy compression has been studied for years because of extremely large volumes of data being produced by today's scientific simulations. None of existing lossy compressors, however, allow users to fix the peak…

Information Theory · Computer Science 2018-07-17 Dingwen Tao , Sheng Di , Xin Liang , Zizhong Chen , Franck Cappello