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There is a lack of benchmarks for evaluating large language models (LLMs) in long-form medical question answering (QA). Most existing medical QA evaluation benchmarks focus on automatic metrics and multiple-choice questions. While valuable,…

Computation and Language · Computer Science 2024-11-21 Pedram Hosseini , Jessica M. Sin , Bing Ren , Bryceton G. Thomas , Elnaz Nouri , Ali Farahanchi , Saeed Hassanpour

Cross-Lingual Summarization (CLS) is the task to generate a summary in one language for an article in a different language. Previous studies on CLS mainly take pipeline methods or train the end-to-end model using the translated parallel…

Computation and Language · Computer Science 2022-03-10 Shuyu Jiang , Dengbiao Tu , Xingshu Chen , Rui Tang , Wenxian Wang , Haizhou Wang

Electronic Medical Records (EMRs), while integral to modern healthcare, present challenges for clinical reasoning and diagnosis due to their complexity and information redundancy. To address this, we proposed medIKAL (Integrating Knowledge…

Computation and Language · Computer Science 2025-02-18 Mingyi Jia , Junwen Duan , Yan Song , Jianxin Wang

In the expanding field of language model applications, medical knowledge representation remains a significant challenge due to the specialized nature of the domain. Large language models, such as GPT-4, obtain reasonable scores on medical…

Computation and Language · Computer Science 2024-05-24 Julien Khlaut , Corentin Dancette , Elodie Ferreres , Alaedine Bennani , Paul Hérent , Pierre Manceron

The breadth, scale, and temporal granularity of modern electronic health records (EHR) systems offers great potential for estimating personalized and contextual patient health trajectories using sequential deep learning. However, learning…

Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…

To broaden the dissemination of scientific knowledge to diverse audiences, it is desirable for scientific document summarization systems to simultaneously control multiple attributes such as length and empirical focus. However, existing…

Computation and Language · Computer Science 2025-08-05 Yixi Ding , Jiaying Wu , Tongyao Zhu , Yanxia Qin , Qian Liu , Min-Yen Kan

We present a unified vision-language framework tailored for ENT endoscopy image analysis that simultaneously tackles three clinically-relevant tasks: image classification, image-to-image retrieval, and text-to-image retrieval. Unlike…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Y Hop Nguyen , Doan Anh Phan Huu , Trung Thai Tran , Nhat Nam Mai , Van Toi Giap , Thao Thi Phuong Dao , Trung-Nghia Le

The rapid accumulation of Electronic Health Records (EHRs) has transformed healthcare by providing valuable data that enhance clinical predictions and diagnoses. While conventional machine learning models have proven effective, they often…

Unstructured data in Electronic Health Records (EHRs) often contains critical information -- complementary to imaging -- that could inform radiologists' diagnoses. But the large volume of notes often associated with patients together with…

Computation and Language · Computer Science 2024-06-12 Hiba Ahsan , Denis Jered McInerney , Jisoo Kim , Christopher Potter , Geoffrey Young , Silvio Amir , Byron C. Wallace

Knowledge graphs constantly evolve with new entities emerging, existing definitions being revised, and entity relationships changing. These changes lead to temporal degradation in entity linking models, characterized as a decline in model…

Machine Learning · Computer Science 2024-10-15 Pengyu Zhang , Congfeng Cao , Klim Zaporojets , Paul Groth

In this paper, we present an overview of ClinIQLink, a shared task, collocated with the 24th BioNLP workshop at ACL 2025, designed to stress-test large language models (LLMs) on medically-oriented question answering aimed at the level of a…

Computation and Language · Computer Science 2025-06-30 Brandon Colelough , Davis Bartels , Dina Demner-Fushman

In this paper, we present a conceptually simple while empirically powerful framework for abstractive summarization, SimCLS, which can bridge the gap between the learning objective and evaluation metrics resulting from the currently…

Computation and Language · Computer Science 2021-06-04 Yixin Liu , Pengfei Liu

Entity resolution (ER), an important and common data cleaning problem, is about detecting data duplicate representations for the same external entities, and merging them into single representations. Relatively recently, declarative rules…

Databases · Computer Science 2017-01-19 Zeinab Bahmani , Leopoldo Bertossi , Nikolaos Vasiloglou

Accurate prediction of clinical outcomes using Electronic Health Records (EHRs) is critical for early intervention, efficient resource allocation, and improved patient care. EHRs contain multimodal data, including both structured data and…

Machine Learning · Computer Science 2025-08-29 Rituparna Datta , Jiaming Cui , Zihan Guan , Vishal G. Reddy , Joshua C. Eby , Gregory Madden , Rupesh Silwal , Anil Vullikanti

Medical Visual Question Answering (MedVQA) aims to answer medical questions according to medical images. However, the complexity of medical data leads to confounders that are difficult to observe, so bias between images and questions is…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Zibo Xu , Qiang Li , Weizhi Nie , Weijie Wang , Anan Liu

Cross-lingual named entity recognition (CrossNER) faces challenges stemming from uneven performance due to the scarcity of multilingual corpora, especially for non-English data. While prior efforts mainly focus on data-driven transfer…

Computation and Language · Computer Science 2024-02-22 Ying Mo , Jian Yang , Jiahao Liu , Qifan Wang , Ruoyu Chen , Jingang Wang , Zhoujun Li

In medical time series disease diagnosis, two key challenges are identified.First, the high annotation cost of medical data leads to overfitting in models trained on label-limited, single-center datasets. To address this, we propose…

Machine Learning · Computer Science 2025-01-31 Yifan Wang , Hongfeng Ai , Ruiqi Li , Maowei Jiang , Cheng Jiang , Chenzhong Li

The use of Large Language Models (LLMs) to support patients in addressing medical questions is becoming increasingly prevalent. However, most of the measures currently used to evaluate the performance of these models in this context only…

Human-Computer Interaction · Computer Science 2026-04-22 Abu Noman Md Sakib , Md. Main Oddin Chisty , Zijie Zhang

The ability of large language models (LLMs) to follow natural language instructions with human-level fluency suggests many opportunities in healthcare to reduce administrative burden and improve quality of care. However, evaluating LLMs on…