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We describe a parallel hybrid symplectic integrator for planetary system integration that runs on a graphics processing unit (GPU). The integrator identifies close approaches between particles and switches from symplectic to Hermite…

Earth and Planetary Astrophysics · Physics 2015-05-19 Alexander Moore , Alice C. Quillen

In this paper we solve on GPUs massive problems with large amount of data, which are not appropriate for solution with the SIMD technology. For the given problem we consider a three-level parallelization. The multithreading of CPU is used…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-02-18 Natalya Litvinenko

We present a new parallel code for computing the dynamical evolution of collisional N-body systems with up to N~10^7 particles. Our code is based on the the Henon Monte Carlo method for solving the Fokker-Planck equation, and makes…

Instrumentation and Methods for Astrophysics · Physics 2015-06-05 Bharath Pattabiraman , Stefan Umbreit , Wei-Keng Liao , Alok Choudhary , Vassiliki Kalogera , Gokhan Memik , Frederic A. Rasio

We discuss the computational bottlenecks in molecular dynamics (MD) and describe the challenges in parallelizing the computation intensive tasks. We present a hybrid algorithm using MPI (Message Passing Interface) with OpenMP threads for…

Computational Physics · Physics 2015-07-28 Anirban Pal , Abhishek Agarwala , Soumyendu Raha , Baidurya Bhattacharya

The essence of multi-modal fusion lies in exploiting the complementary information inherent in diverse modalities. However, prevalent fusion methods rely on traditional neural architectures and are inadequately equipped to capture the…

Artificial Intelligence · Computer Science 2025-06-19 Wenbing Li , Hang Zhou , Junqing Yu , Zikai Song , Wei Yang

We present the extension of the SIBFA (Sum of Interactions Between Fragments Ab initio Computed many-body polarizable force field to condensed phase Molecular Dynamics (MD) simulations. The Quantum-Inspired SIBFA procedure is grounded on…

Modeling interacting galaxies to reproduce observed systems is still a challenge due to the extended parameter space (among other problems). Orbit and basic galaxy parameters can be tackled by fast simulation techniques like the restricted…

Astrophysics · Physics 2009-11-13 Hanns P. Petsch , Christian Theis

We present a GPU implementation of LAMMPS, a widely-used parallel molecular dynamics (MD) software package, and show 5x to 13x single node speedups versus the CPU-only version of LAMMPS. This new CUDA package for LAMMPS also enables…

Materials Science · Physics 2011-03-08 Christian R. Trott , Lars Winterfeld , Paul S. Crozier

We present new versions of the previously published C and CUDA programs for solving the dipolar Gross-Pitaevskii equation in one, two, and three spatial dimensions, which calculate stationary and non-stationary solutions by propagation in…

We have developed an application and implemented parallel algorithms in order to provide a computational framework suitable for massively parallel supercomputers to study the unitary dynamics of quantum systems. We use renowned parallel…

Computational Physics · Physics 2018-11-20 Marlon Brenes , Vipin Kerala Varma , Antonello Scardicchio , Ivan Girotto

The implicit 2D3V particle-in-cell (PIC) code developed to study the interaction of ultrashort pulse lasers with matter [G. M. Petrov and J. Davis, Computer Phys. Comm. 179, 868 (2008); Phys. Plasmas 18, 073102 (2011)] has been parallelized…

Plasma Physics · Physics 2016-08-24 George M. Petrov , Jack Davis

Approximation via sampling is a widespread technique whenever exact solutions are too expensive. In this paper, we present techniques for an efficient parallelization of adaptive (a. k. a. progressive) sampling algorithms on multi-threaded…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-25 Alexander van der Grinten , Eugenio Angriman , Henning Meyerhenke

We present results from a new approach to learning and plasticity in neuromorphic hardware systems: to enable flexibility in implementable learning mechanisms while keeping high efficiency associated with neuromorphic implementations, we…

Neurons and Cognition · Quantitative Biology 2016-10-14 Simon Friedmann , Johannes Schemmel , Andreas Gruebl , Andreas Hartel , Matthias Hock , Karlheinz Meier

We present a high-performance N-body code for self-gravitating collisional systems accelerated with the aid of a new SIMD instruction set extension of the x86 architecture: Advanced Vector eXtensions (AVX), an enhanced version of the…

Instrumentation and Methods for Astrophysics · Physics 2015-05-27 Ataru Tanikawa , Kohji Yoshikawa , Takashi Okamoto , Keigo Nitadori

Furthering our understanding of many of today's interesting problems in plasma physics---including plasma based acceleration and magnetic reconnection with pair production due to quantum electrodynamic effects---requires large-scale kinetic…

Computational Physics · Physics 2020-10-28 Kyle G. Miller , Roman P. Lee , Adam Tableman , Anton Helm , Ricardo A. Fonseca , Viktor K. Decyk , Warren B. Mori

Leapfrog integration has been the method of choice in N-body simulations owing to its low computational cost for a symplectic integrator with second order accuracy. We introduce a new leapfrog integrator that allows for variable timesteps…

Astrophysics · Physics 2007-05-23 Thomas Quinn , Neal Katz , Joachim Stadel , George Lake

ChaNGa is an N-body cosmology simulation application implemented using Charm++. In this paper, we present the parallel design of ChaNGa and address many challenges arising due to the high dynamic ranges of clustered datasets. We focus on…

Instrumentation and Methods for Astrophysics · Physics 2014-09-09 Harshitha Menon , Lukasz Wesolowski , Gengbin Zheng , Pritish Jetley , Laxmikant Kale , Thomas Quinn , Fabio Governato

We present a new C++ code for collisional N-body simulations of star clusters. The code uses the Hermite fourth-order scheme with block time steps, for advancing the particles in time, while the forces and neighboring particles are computed…

Instrumentation and Methods for Astrophysics · Physics 2010-11-08 Simos Konstantinidis , Kostas D. Kokkotas

The "gravitational million-body problem," to model the dynamical evolution of a self-gravitating, collisional N-body system with ~10^6 particles over many relaxation times, remains a major challenge in computational astrophysics.…

Instrumentation and Methods for Astrophysics · Physics 2018-12-07 Carl L. Rodriguez , Bharath Pattabiraman , Sourav Chatterjee , Alok Choudhary , Wei-keng Liao , Meagan Morscher , Frederic A. Rasio

A parallel implementation of coupled spin-lattice dynamics in the LAMMPS molecular dynamics package is presented. The equations of motion for both spin only and coupled spin-lattice dynamics are first reviewed, including a detailed account…

Statistical Mechanics · Physics 2018-08-01 J. Tranchida , S. J. Plimpton , P. Thibaudeau , A. P. Thompson