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Shortage of fully annotated datasets has been a limiting factor in developing deep learning based image segmentation algorithms and the problem becomes more pronounced in multi-organ segmentation. In this paper, we propose a unified…

Computer Vision and Pattern Recognition · Computer Science 2020-06-09 Xi Fang , Pingkun Yan

The ability to dynamically extend a model to new data and classes is critical for multiple organ and tumor segmentation. However, due to privacy regulations, accessing previous data and annotations can be problematic in the medical domain.…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Yixiao Zhang , Xinyi Li , Huimiao Chen , Alan Yuille , Yaoyao Liu , Zongwei Zhou

This paper presents a review of deep learning (DL) in multi-organ segmentation. We summarized the latest DL-based methods for medical image segmentation and applications. These methods were classified into six categories according to their…

Image and Video Processing · Electrical Eng. & Systems 2020-01-30 Yang Lei , Yabo Fu , Tonghe Wang , Richard L. J. Qiu , Walter J. Curran , Tian Liu , Xiaofeng Yang

Multi-organ segmentation holds paramount significance in many clinical tasks. In practice, compared to large fully annotated datasets, multiple small datasets are often more accessible and organs are not labelled consistently. Normally, an…

Computer Vision and Pattern Recognition · Computer Science 2025-03-31 Zhendi Gong , Susan Francis , Eleanor Cox , Stamatios N. Sotiropoulos , Dorothee P. Auer , Guoping Qiu , Andrew P. French , Xin Chen

Accurate and robust segmentation of small organs in whole-body MRI is difficult due to anatomical variation and class imbalance. Recent deep network based approaches have demonstrated promising performance on abdominal multi-organ…

Computer Vision and Pattern Recognition · Computer Science 2018-07-31 Vanya V. Valindria , Ioannis Lavdas , Juan Cerrolaza , Eric O. Aboagye , Andrea G. Rockall , Daniel Rueckert , Ben Glocker

Medical image segmentation has been significantly advanced by deep learning (DL) techniques, though the data scarcity inherent in medical applications poses a great challenge to DL-based segmentation methods. Self-supervised learning offers…

Computer Vision and Pattern Recognition · Computer Science 2024-02-13 Binyan Hu , A. K. Qin

Multi-organ segmentation in medical images is a widely researched task and can save much manual efforts of clinicians in daily routines. Automating the organ segmentation process using deep learning (DL) is a promising solution and…

Image and Video Processing · Electrical Eng. & Systems 2024-03-07 Chang Liu , Fuxin Fan , Annette Schwarz , Andreas Maier

Scarcity of high quality annotated images remains a limiting factor for training accurate image segmentation models. While more and more annotated datasets become publicly available, the number of samples in each individual database is…

Computer Vision and Pattern Recognition · Computer Science 2021-07-14 Gregory Filbrandt , Konstantinos Kamnitsas , David Bernstein , Alexandra Taylor , Ben Glocker

Organ segmentation is a fundamental task in medical imaging since it is useful for many clinical automation pipelines. However, some tasks do not require full segmentation. Instead, a classifier can identify the selected organ without…

Computer Vision and Pattern Recognition · Computer Science 2025-01-13 Halid Ziya Yerebakan , Yoshihisa Shinagawa , Gerardo Hermosillo Valadez

Federated learning is an emerging paradigm allowing large-scale decentralized learning without sharing data across different data owners, which helps address the concern of data privacy in medical image analysis. However, the requirement…

Image and Video Processing · Electrical Eng. & Systems 2023-05-26 Xuanang Xu , Hannah H. Deng , Jaime Gateno , Pingkun Yan

Multi-organ segmentation in whole-body computed tomography (CT) is a constant pre-processing step which finds its application in organ-specific image retrieval, radiotherapy planning, and interventional image analysis. We address this…

Computer Vision and Pattern Recognition · Computer Science 2019-08-15 Fernando Navarro , Suprosanna Shit , Ivan Ezhov , Johannes Paetzold , Andrei Gafita , Jan Peeken , Stephanie Combs , Bjoern Menze

Annotation ambiguity due to inherent data uncertainties such as blurred boundaries in medical scans and different observer expertise and preferences has become a major obstacle for training deep-learning based medical image segmentation…

Computer Vision and Pattern Recognition · Computer Science 2024-03-21 Yicheng Wu , Xiangde Luo , Zhe Xu , Xiaoqing Guo , Lie Ju , Zongyuan Ge , Wenjun Liao , Jianfei Cai

Machine learning models for medical images can help physicians diagnose and manage diseases. However, due to the fact that medical image annotation requires a great deal of manpower and expertise, as well as the fact that clinical…

Image and Video Processing · Electrical Eng. & Systems 2023-11-21 Can Li , Sheng Shao , Junyi Qu , Shuchao Pang , Mehmet A. Orgun

Multi-organ segmentation is one of most successful applications of deep learning in medical image analysis. Deep convolutional neural nets (CNNs) have shown great promise in achieving clinically applicable image segmentation performance on…

Image and Video Processing · Electrical Eng. & Systems 2020-12-18 Hao Tang , Xingwei Liu , Kun Han , Shanlin Sun , Narisu Bai , Xuming Chen , Huang Qian , Yong Liu , Xiaohui Xie

Abdominal multi-organ segmentation in computed tomography (CT) is crucial for many clinical applications including disease detection and treatment planning. Deep learning methods have shown unprecedented performance in this perspective.…

Image and Video Processing · Electrical Eng. & Systems 2023-09-29 Mingjin Chen , Yongkang He , Yongyi Lu

Segmentation is essential for medical image analysis tasks such as intervention planning, therapy guidance, diagnosis, treatment decisions. Deep learning is becoming increasingly prominent for segmentation, where the lack of annotations,…

Computer Vision and Pattern Recognition · Computer Science 2019-03-19 Firat Ozdemir , Zixuan Peng , Christine Tanner , Philipp Fuernstahl , Orcun Goksel

A versatile medical image segmentation model applicable to images acquired with diverse equipment and protocols can facilitate model deployment and maintenance. However, building such a model typically demands a large, diverse, and fully…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Xiaoyang Chen , Hao Zheng , Yuemeng Li , Yuncong Ma , Liang Ma , Hongming Li , Yong Fan

Semantic segmentation is an import task in the medical field to identify the exact extent and orientation of significant structures like organs and pathology. Deep neural networks can perform this task well by leveraging the information…

Computer Vision and Pattern Recognition · Computer Science 2019-09-18 Abhijeet Parida , Arianne Tran , Nassir Navab , Shadi Albarqouni

Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery. In this context, we address fully-automated multi-organ segmentation from abdominal CT and MR images…

Image and Video Processing · Electrical Eng. & Systems 2020-01-29 Pierre-Henri Conze , Ali Emre Kavur , Emilie Cornec-Le Gall , Naciye Sinem Gezer , Yannick Le Meur , M. Alper Selver , François Rousseau

Multi-atlas segmentation is a widely used tool in medical image analysis, providing robust and accurate results by learning from annotated atlas datasets. However, the availability of fully annotated atlas images for training is limited due…

Computer Vision and Pattern Recognition · Computer Science 2016-05-03 Lisa M. Koch , Martin Rajchl , Wenjia Bai , Christian F. Baumgartner , Tong Tong , Jonathan Passerat-Palmbach , Paul Aljabar , Daniel Rueckert