Related papers: Longest Common Subsequence with Gap Constraints

This study develops an algorithm to solve a variation of the Shortest Common Superstring (SCS) problem. There are two modifications to the base SCS problem. First, one string in the set S is allowed to have up to K mistakes, defined as not…

Much research in stringology focuses on structures that can, in a way, ``grasp'' repeats (substrings that occur multiple times) as, for example, the so-called runs, a.k.a. maximal repetitions, compactly describe all tandem repeats. In this…

Given a sequence $S$ of length $n$, a letter-duplicated subsequence is a subsequence of $S$ in the form of $x_1^{d_1}x_2^{d_2}\cdots x_k^{d_k}$ with $x_i\in\Sigma$, $x_j\neq x_{j+1}$ and $d_i\geq 2$ for all $i$ in $[k]$ and $j$ in $[k-1]$.…

In this paper, we study a maximization problem on real sequences. More precisely, for a given sequence, we are interested in computing the supremum of the sequence and an index for which the associated term is maximal. We propose a general…

Prior knowledge and symbolic rules in machine learning are often expressed in the form of label constraints, especially in structured prediction problems. In this work, we compare two common strategies for encoding label constraints in a…

In this paper, we construct a data structure to efficiently compute the longest increasing subsequence of a sequence subject to dynamic updates. Our data structure supports a query for the longest increasing subsequence in $O(r+\log n)$…

We compute the limit distribution for (centered and scaled) length of the longest increasing subsequence of random colored permutations. The limit distribution function is a power of that for usual random permutations computed recently by…

We give an optimal upper bound for the maximum-norm distance from a vertex of a knapsack polyhedron to its nearest feasible lattice point. In a randomised setting, we show that the upper bound can be significantly improved on average. As a…

We obtain optimal lower and upper bounds for the (additive) integrality gaps of integer knapsack problems. In a randomised setting, we show that the integrality gap of a "typical" knapsack problem is drastically smaller than the integrality…

A pangenome captures the genetic diversity across multiple individuals simultaneously, providing a more comprehensive reference for genome analysis than a single linear genome, which may introduce allele bias. A widely adopted pangenome…

In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…

We consider a range of simply stated dynamic data structure problems on strings. An update changes one symbol in the input and a query asks us to compute some function of the pattern of length $m$ and a substring of a longer text. We give…

A correlation is a binary vector that encodes all possible positions of overlaps of two words, where an overlap for an ordered pair of words (u,v) occurs if a suffix of word u matches a prefix of word v. As multiple pairs can have the same…

Longest Common Subsequence ($LCS$) deals with the problem of measuring similarity of two strings. While this problem has been analyzed for decades, the recent interest stems from a practical observation that considering single characters is…

We study the termination problem of the chase algorithm, a central tool in various database problems such as the constraint implication problem, Conjunctive Query optimization, rewriting queries using views, data exchange, and data…

We consider the distribution of the length of the longest subsequence avoiding a given pattern in a random permutation of length n. The well-studied case of a longest increasing subsequence corresponds to avoiding the pattern 21. We show…

A substring Q of a string S is called a shortest unique substring (SUS) for interval [s,t] in S, if Q occurs exactly once in S, this occurrence of Q contains interval [s,t], and every substring of S which contains interval [s,t] and is…

We consider the communication complexity of fundamental longest common prefix (Lcp) problems. In the simplest version, two parties, Alice and Bob, each hold a string, $A$ and $B$, and we want to determine the length of their longest common…

We propose the formula for the number of pairs of consecutive primes $p_n, p_{n+1}<x$ separated by gap $d=p_{n+1}-p_n$ expressed directly by the number of all primes $<x$, i.e. by $\pi(x)$. As the application of this formula we formulate 7…

Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…