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Large language models (LLMs) are having transformative impacts across a wide range of scientific fields, particularly in the biomedical sciences. Just as the goal of Natural Language Processing is to understand sequences of words, a major…

Genomics · Quantitative Biology 2024-09-24 Gonzalo Benegas , Chengzhong Ye , Carlos Albors , Jianan Canal Li , Yun S. Song

Increased interest of scientists, producers and consumers in sheep identification has been stimulated by the dramatic increase in population and the urge to increase productivity. The world population is expected to exceed 9.6 million in…

Computer Vision and Pattern Recognition · Computer Science 2018-06-12 Aya Salama Abdelhady , Aboul Ella Hassanenin , Aly Fahmy

Pervasive sensing is transforming health and activity monitoring by enabling continuous and automated data collection through advanced sensing modalities. While extensive research has been conducted on human subjects, its application in…

Systems and Control · Electrical Eng. & Systems 2025-03-21 Jeffrey D Shulkin , Abhipol Vibhatasilpin , Vedant Adhana

The improvement of computers' capacities, advancements in algorithmic techniques, and the significant increase of available data have enabled the recent developments of Artificial Intelligence (AI) technology. One of its branches, called…

Machine Learning · Computer Science 2021-07-13 Racine Ly

Livestock industries are vulnerable to disease threats, which can cost billions of dollars and have substantial negative social ramifications. Losses are mitigated through increased use of disease-related biosecurity practices, making…

Since the arrival of next-generation sequencing technologies the amount of genetic sequencing data has increased dramatically. This has has fueled an increase in human genetics research. At the same time, with the recent advent of…

Genomics · Quantitative Biology 2016-07-04 Kristiina Ausmees , Pushpam Aji John

Rapid advances in human genomics are enabling researchers to gain a better understanding of the role of the genome in our health and well-being, stimulating hope for more effective and cost efficient healthcare. However, this also prompts a…

Cryptography and Security · Computer Science 2018-08-20 Alexandros Mittos , Bradley Malin , Emiliano De Cristofaro

The domestication and subsequent selection by humans to create breeds of cattle undoubtedly altered the patterning of variation within their genomes. Strong selection to fix advantageous large-effect mutations underlying domesticability,…

Sharing genome data in a privacy-preserving way stands as a major bottleneck in front of the scientific progress promised by the big data era in genomics. A community-driven protocol named genomic data-sharing beacon protocol has been…

Cryptography and Security · Computer Science 2020-08-25 Kerem Ayoz , Erman Ayday , A. Ercument Cicek

Genomic prediction can be a powerful tool to achieve greater rates of genetic gain for quantitative traits if thoroughly integrated into a breeding strategy. In rice as in other crops, the interest in genomic prediction is very strong with…

Genomics · Quantitative Biology 2021-10-01 Jérôme Bartholomé , Parthiban Thathapalli Prakash , Joshua N. Cobb

Dairy farmers should decide to keep or cull a cow based on an objective assessment of her likely performance in the herd. For this purpose, farmers need to identify more resilient cows, which can cope better with farm conditions and…

Machine Learning · Computer Science 2025-11-27 Mahdi Saki , Justin Lipman

In this paper, we use an adaptive modeling framework to model and study how nutritional status (measured by the protein to carbohydrate ratio) may regulate population dynamics and foraging task allocation of social insect colonies.…

Populations and Evolution · Quantitative Biology 2020-05-08 Feng Rao , Marisabel Rodriguez Messan , Angelica Marquez , Nathan Smith , Yun Kang

Bio-loggers, electronic devices used to track animal behaviour through various sensors, have become essential in wildlife research. Despite continuous improvements in their capabilities, bio-loggers still face significant limitations in…

Machine Learning · Computer Science 2025-03-14 Wilhelm Kerle-Malcharek , Karsten Klein , Martin Wikelski , Falk Schreiber , Timm A. Wild

Advancements in genomic research such as high-throughput sequencing techniques have driven modern genomic studies into "big data" disciplines. This data explosion is constantly challenging conventional methods used in genomics. In parallel…

Genomics · Quantitative Biology 2023-10-06 Tianwei Yue , Yuanxin Wang , Longxiang Zhang , Chunming Gu , Haoru Xue , Wenping Wang , Qi Lyu , Yujie Dun

Sequence comparison across multiple organisms aids in the detection of regions under selection. However, resource limitations require a prioritization of genomes to be sequenced. This prioritization should be grounded in two considerations:…

Genomics · Quantitative Biology 2007-05-23 Jon D. McAuliffe , Michael I. Jordan , Lior Pachter

Background: Plant breeders are utilising an increasingly diverse range of data types in order to identify lines that have desirable characteristics which are suitable to be taken forward in plant breeding programmes. There are a number of…

Human-Computer Interaction · Computer Science 2014-07-15 Paul D. Shaw , Martin Graham , Jessie Kennedy , Iain Milne , David F. Marshall

A challenge in global change biology is to predict how species will respond to future environmental change and to manage these responses. To make such predictions and management actions robust to novel futures, we need to accurately…

Diversity is an important factor in evolutionary algorithms to prevent premature convergence towards a single local optimum. In order to maintain diversity throughout the process of evolution, various means exist in literature. We analyze…

Neural and Evolutionary Computing · Computer Science 2018-10-31 Thomas Gabor , Lenz Belzner , Claudia Linnhoff-Popien

Birds are vital parts of ecosystems across the world and are an excellent measure of the quality of life on earth. Many bird species are endangered while others are already extinct. Ecological efforts in understanding and monitoring bird…

Multimedia · Computer Science 2022-11-16 Chandra Kanth Nagesh , Abhishek Purushothama

With the global population increasing and arable land resources becoming increasingly limited, smart and precision agriculture have emerged as essential directions for sustainable agricultural development. Artificial intelligence (AI),…

Machine Learning · Computer Science 2025-10-15 Xing Hu , Haodong Chen , Qianqian Duan , Dawei Zhang