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Single-cell RNA sequencing provides tremendous insights to understand biological systems. However, the noise from dropout can corrupt the downstream biological analysis. Hence, it is desirable to impute the dropouts accurately. In this…

Quantitative Methods · Quantitative Biology 2020-08-11 Kexin Huang

Deep neural networks (DNNs) continue to grow rapidly in size, making them infeasible to train on a single device. Pipeline parallelism is commonly used in existing DNN systems to support large-scale DNN training by partitioning a DNN into…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-29 Byungsoo Jeon , Mengdi Wu , Shiyi Cao , Sunghyun Kim , Sunghyun Park , Neeraj Aggarwal , Colin Unger , Daiyaan Arfeen , Peiyuan Liao , Xupeng Miao , Mohammad Alizadeh , Gregory R. Ganger , Tianqi Chen , Zhihao Jia

Graph Neural Networks (GNNs) are the go-to model for graph data analysis. However, GNNs rely on two key operations - aggregation and update, which can pose challenges for low-latency inference tasks or resource-constrained scenarios. Simple…

Machine Learning · Computer Science 2026-01-14 Amir Eskandari , Aman Anand , Elyas Rashno , Farhana Zulkernine

This paper presents a novel approach to neural network pruning by integrating a graph-based observation space into an AutoML framework to address the limitations of existing methods. Traditional pruning approaches often depend on…

Machine Learning · Computer Science 2025-09-16 Dieter Balemans , Thomas Huybrechts , Jan Steckel , Siegfried Mercelis

Graph Neural Networks (GNNs) are highly vulnerable to adversarial attacks, which can greatly degrade their performance. Existing graph purification methods attempt to address this issue by filtering attacked graphs. However, they struggle…

Machine Learning · Computer Science 2026-04-13 Xin He , Wenqi Fan , Yili Wang , Chengyi Liu , Rui Miao , Xin Juan , Xin Wang

Relational inference aims to identify interactions between parts of a dynamical system from the observed dynamics. Current state-of-the-art methods fit the dynamics with a graph neural network (GNN) on a learnable graph. They use one-step…

Machine Learning · Computer Science 2023-12-21 Liming Pan , Cheng Shi , Ivan Dokmanić

We explore the feasibility of combining Graph Neural Network-based policy architectures with Deep Reinforcement Learning as an approach to problems in systems. This fits particularly well with operations on networks, which naturally take…

Machine Learning · Computer Science 2021-12-02 Oliver Hope , Eiko Yoneki

Large language models (LLMs) have demonstrated impressive capabilities in natural language understanding and generation, including multi-step reasoning such as mathematical proving. However, existing approaches often lack an explicit and…

Computation and Language · Computer Science 2026-05-19 Yutong Li , Yitian Zhou , Xudong Wang , GuoChen , Caiyan Qin

Graph Neural Networks (GNNs) have emerged as a notorious alternative to address learning problems dealing with non-Euclidean datasets. However, although most works assume that the graph is perfectly known, the observed topology is prone to…

Machine Learning · Computer Science 2023-12-12 Victor M. Tenorio , Samuel Rey , Antonio G. Marques

We propose an efficient framework that integrates distance-aware multi-hop message passing with dynamic topology refinement. Unlike standard GNNs that rely on shallow, fixed-hop aggregation, DRTR leverages both static preprocessing and…

Machine Learning · Computer Science 2025-12-01 Dong Liu , Yanxuan Yu

Graph transformer networks (GTN) are a variant of graph convolutional networks (GCN) that are targeted to heterogeneous graphs in which nodes and edges have associated type information that can be exploited to improve inference accuracy.…

Artificial Intelligence · Computer Science 2021-06-17 Loc Hoang , Udit Agarwal , Gurbinder Gill , Roshan Dathathri , Abhik Seal , Brian Martin , Keshav Pingali

Previous AutoML pruning works utilized individual layer features to automatically prune filters. We analyze the correlation for two layers from the different blocks which have a short-cut structure. It shows that, in one block, the deeper…

Computer Vision and Pattern Recognition · Computer Science 2021-09-24 Mingyang Zhang , Xinyi Yu , Jingtao Rong , Linlin Ou

Graph Neural Network (GNN) is an emerging technique for graph-based learning tasks such as node classification. In this work, we reveal the vulnerability of GNN to the imbalance of node labels. Traditional solutions for imbalanced…

Machine Learning · Computer Science 2022-02-08 Xiaohe Li , Lijie Wen , Yawen Deng , Fuli Feng , Xuming Hu , Lei Wang , Zide Fan

We address the efficiency issue for the construction of a deep graph neural network (GNN). The approach exploits the idea of representing each input graph as a fixed point of a dynamical system (implemented through a recurrent neural…

Machine Learning · Computer Science 2019-11-21 Claudio Gallicchio , Alessio Micheli

In this paper, we propose a novel framework, the Sampling-guided Heterogeneous Graph Neural Network (SHT-GNN), to effectively tackle the challenge of missing data imputation in longitudinal studies. Unlike traditional methods, which often…

Machine Learning · Computer Science 2024-11-08 Zhaoyang Zhang , Ziqi Chen , Qiao Liu , Jinhan Xie , Hongtu Zhu

Missing data has a ubiquitous presence in real-life applications of machine learning techniques. Imputation methods are algorithms conceived for restoring missing values in the data, based on other entries in the database. The choice of the…

Machine Learning · Computer Science 2017-08-16 Unai Garciarena , Roberto Santana , Alexander Mendiburu

We introduce Graph Hopfield Networks, whose energy function couples associative memory retrieval with graph Laplacian smoothing for node classification. Gradient descent on this joint energy yields an iterative update interleaving Hopfield…

Machine Learning · Computer Science 2026-03-05 Abinav Rao , Alex Wa , Rishi Athavale

Graph Neural Networks (GNNs) have shown significant promise in various domains, such as recommendation systems, bioinformatics, and network analysis. However, the irregularity of graph data poses unique challenges for efficient computation,…

Machine Learning · Computer Science 2024-11-26 Pol Puigdemont , Enrico Russo , Axel Wassington , Abhijit Das , Sergi Abadal , Maurizio Palesi

Missing data is a common problem faced with real-world datasets. Imputation is a widely used technique to estimate the missing data. State-of-the-art imputation approaches, such as Generative Adversarial Imputation Nets (GAIN), model the…

Machine Learning · Computer Science 2020-12-02 Saqib Ejaz Awan , Mohammed Bennamoun , Ferdous Sohel , Frank M Sanfilippo , Girish Dwivedi

Deep Learning (DL) has developed to become a corner-stone in many everyday applications that we are now relying on. However, making sure that the DL model uses the underlying hardware efficiently takes a lot of effort. Knowledge about…

Performance · Computer Science 2023-03-22 Karthick Panner Selvam , Mats Brorsson
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