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A useful approach to the mathematical analysis of large-scale biological networks is based upon their decompositions into monotone dynamical systems. This paper deals with two computational problems associated to finding decompositions…

Molecular Networks · Quantitative Biology 2007-05-23 Bhaskar DasGupta , German Andres Enciso , Eduardo Sontag , Yi Zhang

With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…

Databases · Computer Science 2013-08-16 Wajdi Dhifli , Mohamed Moussaoui , Rabie Saidi , Engelbert Mephu Nguifo

Finding optimal matchings in dense graphs is of general interest and of particular importance in social, transportation and biological networks. While developing optimal solutions for various matching problems is important, the running…

Data Structures and Algorithms · Computer Science 2020-11-16 Nitish K. Panigrahy , Prithwish Basu , Don Towsley

Efficient probability density estimation is a core challenge in statistical machine learning. Tensor-based probabilistic graph methods address interpretability and stability concerns encountered in neural network approaches. However, a…

Machine Learning · Computer Science 2023-12-14 Ruituo Wu , Jiani Liu , Ce Zhu , Anh-Huy Phan , Ivan V. Oseledets , Yipeng Liu

Given a fixed graph $H$ that embeds in a surface $\Sigma$, what is the maximum number of copies of $H$ in an $n$-vertex graph $G$ that embeds in $\Sigma$? We show that the answer is $\Theta(n^{f(H)})$, where $f(H)$ is a graph invariant…

Combinatorics · Mathematics 2022-10-19 Tony Huynh , Gwenaël Joret , David R. Wood

We develop a novel parallel decomposition strategy for unweighted, undirected graphs, based on growing disjoint connected clusters from batches of centers progressively selected from yet uncovered nodes. With respect to similar previous…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-02-09 Matteo Ceccarello , Andrea Pietracaprina , Geppino Pucci , Eli Upfal

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

We consider the minimum vertex cover problem in hypergraphs in which every hyperedge has size k (also known as minimum hitting set problem, or minimum set cover with element frequency k). Simple algorithms exist that provide…

Data Structures and Algorithms · Computer Science 2010-12-14 Jean Cardinal , Marek Karpinski , Richard Schmied , Claus Viehmann

In this paper, we present a novel way to summarize the structure of large graphs, based on non-parametric estimation of edge density in directed multigraphs. Following coclustering approach, we use a clustering of the vertices, with a…

Social and Information Networks · Computer Science 2015-08-07 Marc Boullé

A graph $G$ is $\textit{universal}$ for a (finite) family $\mathcal{H}$ of graphs if every $H \in \mathcal{H}$ is a subgraph of $G$. For a given family $\mathcal{H}$, the goal is to determine the smallest number of edges an…

Combinatorics · Mathematics 2024-01-12 Noga Alon , Natalie Dodson , Carmen Jackson , Rose McCarty , Rajko Nenadov , Lani Southern

We discuss the problem of extending data mining approaches to cases in which data points arise in the form of individual graphs. Being able to find the intrinsic low-dimensionality in ensembles of graphs can be useful in a variety of…

Social and Information Networks · Computer Science 2016-12-12 Karthikeyan Rajendran , Assimakis A. Kattis , Alexander Holiday , Risi Kondor , Ioannis G. Kevrekidis

We present a new way to summarize and select mixture models via the hierarchical clustering tree (dendrogram) constructed from an overfitted latent mixing measure. Our proposed method bridges agglomerative hierarchical clustering and…

Methodology · Statistics 2024-03-11 Dat Do , Linh Do , Scott A. McKinley , Jonathan Terhorst , XuanLong Nguyen

Dense subgraph discovery is a key primitive in many graph mining applications, such as detecting communities in social networks and mining gene correlation from biological data. Most studies on dense subgraph mining only deal with one…

Social and Information Networks · Computer Science 2018-02-21 Yu Yang , Lingyang Chu , Yanyan Zhang , Zhefeng Wang , Jian Pei , Enhong Chen

This paper presents a graph bundling algorithm that agglomerates edges taking into account both spatial proximity as well as user-defined criteria in order to reveal patterns that were not perceivable with previous bundling techniques. Each…

Graphics · Computer Science 2015-04-13 Daniel C. Moura

In distributed networks, it is often useful for the nodes to be aware of dense subgraphs, e.g., such a dense subgraph could reveal dense subtructures in otherwise sparse graphs (e.g. the World Wide Web or social networks); these might…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-08 Atish Das Sarma , Ashwin Lall , Danupon Nanongkai , Amitabh Trehan

Given a $k$-graph $H$ a complete blow-up of $H$ is a $k$-graph $\hat{H}$ formed by replacing each $v\in V(H)$ by a non-empty vertex class $A_v$ and then inserting all edges between any $k$ vertex classes corresponding to an edge of $H$.…

Combinatorics · Mathematics 2021-11-19 Adam Sanitt , John Talbot

While in many graph mining applications it is crucial to handle a stream of updates efficiently in terms of {\em both} time and space, not much was known about achieving such type of algorithm. In this paper we study this issue for a…

Data Structures and Algorithms · Computer Science 2015-09-23 Sayan Bhattacharya , Monika Henzinger , Danupon Nanongkai , Charalampos E. Tsourakakis

Spectral algorithms are an important building block in machine learning and graph algorithms. We are interested in studying when such algorithms can be applied directly to provide optimal solutions to inference tasks. Previous works by…

Data Structures and Algorithms · Computer Science 2022-10-13 Souvik Dhara , Julia Gaudio , Elchanan Mossel , Colin Sandon

We consider deletion problems in graphs and supermodular functions where the goal is to reduce density. In Graph Density Deletion (GraphDD), we are given a graph $G=(V,E)$ with non-negative vertex costs and a non-negative parameter $\rho…

Data Structures and Algorithms · Computer Science 2025-03-13 Karthekeyan Chandrasekaran , Chandra Chekuri , Shubhang Kulkarni

Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general…

Data Structures and Algorithms · Computer Science 2019-02-20 Martin Furer , Shiva Prasad Kasiviswanathan
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