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We consider tilings of Euclidean spaces by polygons or polyhedra, in particular, tilings made by a substitution process, such as the Penrose tilings of the plane. We define an isomorphism invariant related to a subgroup of rotations and…
Fluorescence polarization microscopy images both the intensity and orientation of fluorescent dipoles, which plays a vital role in studying the molecular structure and dynamics of bio-complex. However, it is difficult to resolve the dipole…
We give a complete solution to the extremal topological combinatorial problem of finding the minimum number of tiles needed to construct a polyomino with $h$ holes. We denote this number by $g(h)$ and say that a polyomino is crystallized if…
Anderson and Putnam showed that the cohomology of a substitution tiling space may be computed by collaring tiles to obtain a substitution which ``forces its border.'' One can then represent the tiling space as an inverse limit of an…
In the list coloring problem for two matroids, we are given matroids $M_1=(S,{\cal I}_1)$ and $M_2=(S,{\cal I}_2)$ on the same ground set $S$, and the goal is to determine the smallest number $k$ such that given arbitrary lists $L_s$ of $k$…
The moduli space of Riemann surfaces with at least two punctures can be decomposed into a cell complex by using a particular family of ribbon graphs called Nakamura graphs. We distinguish the moduli space with all punctures labelled from…
In this paper, we develop the mathematical tools needed to explore isotopy classes of tilings on hyperbolic surfaces of finite genus, possibly nonorientable, with boundary, and punctured. More specifically, we generalize results on…
We study the number of tilings of skew Young diagrams by ribbon tiles shaped like Dyck paths, in which the tiles are "vertically decreasing". We use these quantities to compute pairing probabilities in the double-dimer model: Given a planar…
We study the space of all tilings which can be obtained using the Robinson tiles (this is a two-dimensional subshift of finite type). We prove that it has a unique minimal subshift, and describe it by means of a substitution. This…
Geometric modeling by constraints leads to large systems of algebraic equations. This paper studies bipartite graphs underlaid by systems of equations. It shows how these graphs make possible to polynomially decompose these systems into…
In this paper, we continue our study of blade arrangements and the positroidal subdivisions which are induced by them on $\Delta_{k,n}$. A blade is a tropical hypersurface which is generated by a system of $n$ affine simple roots of type…
We show that the dimer algebra of a connected Postnikov diagram in the disc is bimodule internally 3-Calabi-Yau in the sense of the author's earlier work. As a consequence, we obtain an additive categorification of the cluster algebra…
In this paper we present an explicit combinatorial description of a special class of facets of the secondary polytopes of hypersimplices. These facets correspond to polytopal subdivisions called multi-splits. We show a relation between the…
In this paper we present an efficient algorithm for bivariate interpolation, which is based on the use of the partition of unity method for constructing a global interpolant. It is obtained by combining local radial basis function…
The nonnegative Grassmannian is a cell complex with rich geometric, algebraic, and combinatorial structures. Its study involves interesting combinatorial objects, such as positroids and plabic graphs. Remarkably, the same combinatorial…
Given a graph $G$ and collection of subgraphs $T$ (called tiles), we consider covering $G$ with copies of tiles in $T$ so that each vertex $v\in G$ is covered with a predetermined multiplicity. The multinomial tiling model is a natural…
Polarizing microscopy brought about many advancements in the science of liquid crystals and other soft materials, including those of biological origin. Recent developments in optics and computer-based analysis enabled a new generation of…
A binary frame template is a device for creating binary matroids from graphic or cographic matroids. Such matroids are said to conform or coconform to the template. We introduce a preorder on these templates and determine the nontrivial…
In this paper, we give a simple combinatorial explanation of a formula of A. Postnikov relating bicolored rooted trees to bicolored binary trees. We also present generalized formulas for the number of labeled k-ary trees, rooted labeled…
We study the geometry of the Kontsevich compactification of stable maps to the Grassmannian of lines in the projective space. We consider a stratification of this space. As an application we compute the degree of the variety parametrizing…