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We propose a novel positional encoding for learning graph on Transformer architecture. Existing approaches either linearize a graph to encode absolute position in the sequence of nodes, or encode relative position with another node using…

Machine Learning · Computer Science 2022-10-17 Wonpyo Park , Woonggi Chang , Donggeon Lee , Juntae Kim , Seung-won Hwang

With the explosion of graph-structured data, link prediction has emerged as an increasingly important task. Embedding methods for link prediction utilize neural networks to generate node embeddings, which are subsequently employed to…

Machine Learning · Computer Science 2023-06-21 Jun Fu , Xiaojuan Zhang , Shuang Li , Dali Chen

Illicit financial activities such as money laundering often manifest through recurrent topological patterns in transaction networks. Detecting these patterns automatically remains challenging due to the scarcity of labeled real-world data…

Machine Learning · Computer Science 2026-01-30 Francesco Zola , Lucia Muñoz , Andrea Venturi , Amaia Gil

Identifying molecules that exhibit some pre-specified properties is a difficult problem to solve. In the last few years, deep generative models have been used for molecule generation. Deep Graph Variational Autoencoders are among the most…

Machine Learning · Computer Science 2023-06-09 Davide Rigoni , Nicolò Navarin , Alessandro Sperduti

Self-supervised learning guided by masked image modelling, such as Masked AutoEncoder (MAE), has attracted wide attention for pretraining vision transformers in remote sensing. However, MAE tends to excessively focus on pixel details,…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Yi Wang , Hugo Hernández Hernández , Conrad M Albrecht , Xiao Xiang Zhu

In recent years Variation Autoencoders have become one of the most popular unsupervised learning of complicated distributions.Variational Autoencoder (VAE) provides more efficient reconstructive performance over a traditional autoencoder.…

Machine Learning · Statistics 2017-07-12 Gautam Ramachandra

Deep generative models have made tremendous advances in image and signal representation learning and generation. These models employ the full Euclidean space or a bounded subset as the latent space, whose flat geometry, however, is often…

Machine Learning · Computer Science 2020-08-17 Stefan Schonsheck , Jie Chen , Rongjie Lai

Self-supervised graph representation learning (SSGRL) is a representation learning paradigm used to reduce or avoid manual labeling. An essential part of SSGRL is graph data augmentation. Existing methods usually rely on heuristics commonly…

Machine Learning · Computer Science 2024-12-25 Ahmed E. Samy , Zekarias T. Kefatoa , Sarunas Girdzijauskasa

Semi-supervised learning is sought for leveraging the unlabelled data when labelled data is difficult or expensive to acquire. Deep generative models (e.g., Variational Autoencoder (VAE)) and semisupervised Generative Adversarial Networks…

Machine Learning · Computer Science 2019-05-09 Xiang Zhang , Lina Yao , Feng Yuan

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large…

Machine Learning · Computer Science 2020-09-04 Yanqiao Zhu , Yichen Xu , Feng Yu , Shu Wu , Liang Wang

Graph autoencoders (GAE) and variational graph autoencoders (VGAE) emerged as powerful methods for link prediction. Their performances are less impressive on community detection problems where, according to recent and concurring…

Medical report generation, which aims to automatically generate a long and coherent report of a given medical image, has been receiving growing research interests. Existing approaches mainly adopt a supervised manner and heavily rely on…

Machine Learning · Computer Science 2021-11-16 Fenglin Liu , Chenyu You , Xian Wu , Shen Ge , Sheng Wang , Xu Sun

Masked graph modeling (MGM) is a promising approach for molecular representation learning (MRL).However, extending the success of re-mask decoding from 2D to 3D MGM is non-trivial, primarily due to two conflicting challenges: avoiding 2D…

Machine Learning · Computer Science 2025-10-23 Chang Wu , Zhiyuan Liu , Wen Shu , Liang Wang , Yanchen Luo , Wenqiang Lei , Yatao Bian , Junfeng Fang , Xiang Wang

Inspired by the masked language modeling (MLM) in natural language processing tasks, the masked image modeling (MIM) has been recognized as a strong self-supervised pre-training method in computer vision. However, the high random mask ratio…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Zhaowen Li , Yousong Zhu , Zhiyang Chen , Wei Li , Chaoyang Zhao , Rui Zhao , Ming Tang , Jinqiao Wang

Spatial-temporal graph representations play a crucial role in urban sensing applications, including traffic analysis, human mobility behavior modeling, and citywide crime prediction. However, a key challenge lies in the noisy and sparse…

Machine Learning · Computer Science 2025-08-15 Qianru Zhang , Xinyi Gao , Haixin Wang , Dong Huang , Siu-Ming Yiu , Hongzhi Yin

Representation learning has overcome the often arduous and manual featurization of networks through (unsupervised) feature learning as it results in embeddings that can apply to a variety of downstream learning tasks. The focus of…

Machine Learning · Computer Science 2021-01-01 Piotr Bielak , Tomasz Kajdanowicz , Nitesh V. Chawla

Weakly supervised graph anomaly detection aims to unveil unusual graph instances, e.g., nodes, whose behaviors significantly differ from normal ones, given only a limited number of annotated anomalies and abundant unlabeled samples. A major…

Machine Learning · Computer Science 2026-05-13 Yingjie Zhou , Yuqin Xie , Fanxing Liu , Dongjin Song , Ce Zhu , Lingqiao Liu

Graph simulation has recently received a surge of attention in graph processing and analytics. In real-life applications, e.g. social science, biology, and chemistry, many graphs are composed of a series of evolving graphs (i.e., temporal…

Machine Learning · Computer Science 2025-10-08 Sheng Xiang , Chenhao Xu , Dawei Cheng , Xiaoyang Wang , Ying Zhang

The prevalence of real-world multi-view data makes incomplete multi-view clustering (IMVC) a crucial research. The rapid development of Graph Neural Networks (GNNs) has established them as one of the mainstream approaches for multi-view…

Regularized autoencoders learn the latent codes, a structure with the regularization under the distribution, which enables them the capability to infer the latent codes given observations and generate new samples given the codes. However,…

Machine Learning · Computer Science 2019-02-18 Wenju Xu , Shawn Keshmiri , Guanghui Wang