Related papers: Maximum Agreement Subtrees and H\"older homeomorph…
We investigate the structure of trees that have greatest maximum eigenvalue among all trees with a given degree sequence. We show that in such an extremal tree the degree sequence is non-increasing with respect to an ordering of the…
The Brownian separable permutons are a one-parameter family -- indexed by $p\in(0,1)$ -- of universal limits of random constrained permutations. We show that for each $p\in (0,1)$, there are explicit constants $1/2 < \alpha_*(p) \leq…
In this paper, we consider the random plane forest uniformly drawn from all possible plane forests with a given degree sequence. Under suitable conditions on the degree sequences, we consider the limit of a sequence of such forests with the…
A widely used method for determining the similarity of two labeled trees is to compute a maximum agreement subtree of the two trees. Previous work on this similarity measure is only concerned with the comparison of labeled trees of two…
In this paper we show how to find nearly optimal embeddings of large trees in several natural classes of graphs. The size of the tree T can be as large as a constant fraction of the size of the graph G, and the maximum degree of T can be…
The Horton-Strahler number of a rooted tree $T$ is the height of the tallest complete binary tree that can be homeomorphically embedded in $T$. The number of full binary trees with $n$ internal vertices and Horton-Strahler number $s$ is…
We present new and improved fixed-parameter algorithms for computing maximum agreement forests (MAFs) of pairs of rooted binary phylogenetic trees. The size of such a forest for two trees corresponds to their subtree prune-and-regraft…
We estimate the size of a labelled tree by comparing the amount of (labelled) nodes with the size of the set of labels. Roughly speaking, a exponentially big labelled tree, is any labelled tree that has an exponential gap between its size,…
A labeling scheme for nearest common ancestors assigns a distinct binary string, called the label, to every node of a tree, so that given the labels of two nodes (and no further information about the topology of the tree) we can compute the…
We give a 2-approximation algorithm for the Maximum Agreement Forest problem on two rooted binary trees. This NP-hard problem has been studied extensively in the past two decades, since it can be used to compute the rooted Subtree…
We study random bipartite planar maps defined by assigning nonnegative weights to each face of a map. We prove that for certain choices of weights a unique large face, having degree proportional to the total number of edges in the maps,…
We study the influence of the seed in random trees grown according to the uniform attachment model, also known as uniform random recursive trees. We show that different seeds lead to different distributions of limiting trees from a total…
We construct a pair of non-isomorphic, bipartite graphs which are not distinguished by counting the number of homomorphisms to any tree. This answers a question motivated by Atserias et al. (LICS 2021). In order to establish the…
A Brownian motion tree (BMT) model is a Gaussian model whose associated set of covariance matrices is linearly constrained according to common ancestry in a phylogenetic tree. We study the complexity of inferring the maximum likelihood (ML)…
This study is dedicated to precise distributional analyses of the height of non-plane unlabelled binary trees ("Otter trees"), when trees of a given size are taken with equal likelihood. The height of a rooted tree of size $n$ is proved to…
There exist several methods dealing with the reconstruction of rooted phylogenetic networks explaining different evolutionary histories given by rooted binary phylogenetic trees. In practice, however, due to insufficient information of the…
Any Boolean function corresponds with a complete full binary decision tree. This tree can in turn be represented in a maximally compact form as a direct acyclic graph where common subtrees are factored and shared, keeping only one copy of…
In a deterministic or random tree, a notion of ancestral diversity can be defined as follows. Sample independently $n$ groups of $k$ leaves and count the number $N_n(k)$ of distinct most recent common ancestors of each of the groups. As $n$…
We analyze the eigenvalues of the adjacency matrices of a wide variety of random trees. Using general, broadly applicable arguments based on the interlacing inequalities for the eigenvalues of a principal submatrix of a Hermitian matrix and…
A hypertree is a connected hypergraph without cycles. Further a hypertree is called an $r$-tree if, additionally, it is $r$-uniform. Note that 2-trees are just ordinary trees. A classical result states that for any 2-tree $T$ with…