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A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

Algebraic Topology · Mathematics 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

The problem of node-similarity in networks has motivated a plethora of such measures between node-pairs, which make use of the underlying graph structure. However, higher-order relations cannot be losslessly captured by mere graphs and…

Social and Information Networks · Computer Science 2021-11-02 Govind Sharma , Paarth Gupta , M. Narasihma Murty

As a generalization of graphs, hypergraphs are widely used to model higher-order relations in data. This paper explores the benefit of the hypergraph structure for the interpolation of point cloud data that contain no explicit structural…

Numerical Analysis · Mathematics 2025-03-18 Kehan Shi , Martin Burger

The rich spectral information of the graph Laplacian has been instrumental in graph theory, machine learning, and graph signal processing for applications such as graph classification, clustering, or eigenmode analysis. Recently, the Hodge…

Algebraic Topology · Mathematics 2024-03-27 Vincent P. Grande , Michael T. Schaub

Lattice structures play a central role in spectral graph theory, offering analytical insight into diffusion, synchronization, and transport processes on regular discrete spaces. While their spectral properties are completely characterized…

Combinatorics · Mathematics 2025-11-17 Eleonora Andreotti

Convolutional layers within graph neural networks operate by aggregating information about local neighbourhood structures; one common way to encode such substructures is through random walks. The distribution of these random walks evolves…

Machine Learning · Computer Science 2022-05-30 Csaba Toth , Darrick Lee , Celia Hacker , Harald Oberhauser

Simplicial complexes can be viewed as high dimensional generalizations of graphs that explicitly encode multi-way ordered relations between vertices at different resolutions, all at once. This concept is central towards detection of higher…

Machine Learning · Computer Science 2022-07-05 Alexandros Dimitrios Keros , Vidit Nanda , Kartic Subr

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology. Although persistence barcodes and diagrams have permitted…

Applications · Statistics 2019-01-08 Raoul R. Wadhwa , Andrew Dhawan , Drew F. K. Williamson , Jacob G. Scott

Persistent homology (PH) has been widely applied to graph data to extract topological features. However, little attention has been paid to how different distance functions on a graph affect the resulting persistence barcodes and their…

Algebraic Topology · Mathematics 2026-02-17 Eunwoo Heo , Byeongchan Choi , Jae-Hun Jung

In a world abundant with diverse data arising from complex acquisition techniques, there is a growing need for new data analysis methods. In this paper we focus on high-dimensional data that are organized into several hierarchical datasets.…

Machine Learning · Computer Science 2021-04-06 Lior Aloni , Omer Bobrowski , Ronen Talmon

Representation learning on graphs is a fundamental problem that can be crucial in various tasks. Graph neural networks, the dominant approach for graph representation learning, are limited in their representation power. Therefore, it can be…

Machine Learning · Computer Science 2025-01-17 Zuoyu Yan , Qi Zhao , Ze Ye , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Complex systems are difficult to study not only because they are nonlinear, multiscale, and often nonstationary, but because their scientifically relevant organization is often invisible at the level of individual components, pairwise…

Physics and Society · Physics 2026-03-30 Mark M. Bailey

The theory of graphons has proven to be a powerful tool in many areas of graph theory. In this paper, we introduce several foundational aspects of the theory of digraphons -- asymmetric two-variable functions that arise as limits of…

Combinatorics · Mathematics 2025-12-16 Jan Hladký , Petr Savický

Hypergraphs are mathematical models for many problems in data sciences. In recent decades, the topological properties of hypergraphs have been studied and various kinds of (co)homologies have been constructed (cf. [3, 4, 12]). In this…

Algebraic Topology · Mathematics 2018-03-15 Stephane Bressan , Jingyan Li , Shiquan Ren , Jie Wu

Graph neural networks have become the default choice by practitioners for graph learning tasks such as graph classification and node classification. Nevertheless, popular graph neural network models still struggle to capture higher-order…

Machine Learning · Computer Science 2024-11-27 Davide Buffelli , Farzin Soleymani , Bastian Rieck

We present a new tool for data analysis: persistence discrete homology, which is well-suited to analyze filtrations of graphs. In particular, we provide a novel way of representing high-dimensional data as a filtration of graphs using…

Algebraic Topology · Mathematics 2025-06-23 Chris Kapulkin , Nathan Kershaw

This article proposes a topological method that extracts hierarchical structures of various amorphous solids. The method is based on the persistence diagram (PD), a mathematical tool for capturing shapes of multiscale data. The input to the…

Hypergraphs are a generalization of graphs in which edges can connect any number of vertices. They allow the modeling of complex networks with higher-order interactions, and their spectral theory studies the qualitative properties that can…

Combinatorics · Mathematics 2021-12-01 Raffaella Mulas

In this survey, we explore recent literature on finding the cores of higher graphs using geometric and topological means. We study graphs, hypergraphs, and simplicial complexes, all of which are models of higher graphs. We study the notion…

History and Overview · Mathematics 2025-06-30 Inés García-Redondo , Claudia Landi , Sarah Percival , Anda Skeja , Bei Wang , Ling Zhou

A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via persistent homology, which encodes features of interest as…

Algebraic Topology · Mathematics 2026-02-04 Christian Lentz , Gregory Henselman-Petrusek , Lori Ziegelmeier