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Dimensionality reduction methods have found vast application as visualization tools in diverse areas of science. Although many different methods exist, their performance is often insufficient for providing quick insight into many…

In cryo-electron microscopy (EM), molecular structures are determined from large numbers of projection images of individual particles. To harness the full power of this single-molecule information, we use the Bayesian inference of EM…

Biomolecules · Quantitative Biology 2018-01-17 Pilar Cossio , David Rohr , Fabio Baruffa , Markus Rampp , Volker Lindenstruth , Gerhard Hummer

An adpative integration technique for time advancement of particle motion in the context of coupled computational fluid dynamics (CFD) - discrete element method (DEM) simulations is presented in this work. CFD-DEM models provide an accurate…

Computational Physics · Physics 2018-02-28 Hariswaran Sitaraman , Ray Grout

CFD-DEM is used to simulate solid-fluid systems. DEM models the motion of discrete particles while CFD models the fluid phase. Coupling both necessitates the calculation of the void fraction and the solid-fluid forces resulting in a…

Fluid Dynamics · Physics 2023-01-06 Toni El Geitani , Shahab Golshan , Bruno Blais

A higher-order fictitious domain method (FDM) for Reissner-Mindlin shells is proposed which uses a three-dimensional background mesh for the discretization. The midsurface of the shell is immersed into the higher-order background mesh and…

Computational Engineering, Finance, and Science · Computer Science 2020-09-21 D. Schöllhammer , T. P. Fries

High-fidelity numerical methods that model the physical layout of a device are essential for the design of many technologies. For methods that characterize electromagnetic effects, these numerical methods are referred to as computational…

Diffusion Probabilistic Models (DPMs) suffer from inefficient inference due to their slow sampling and high memory consumption, which limits their applicability to various medical imaging applications. In this work, we propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Fahim Ahmed Zaman , Mathews Jacob , Amanda Chang , Kan Liu , Milan Sonka , Xiaodong Wu

Empirical Dynamic Modeling (EDM) is a state-of-the-art non-linear time-series analysis framework. Despite its wide applicability, EDM was not scalable to large datasets due to its expensive computational cost. To overcome this obstacle,…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-27 Keichi Takahashi , Wassapon Watanakeesuntorn , Kohei Ichikawa , Joseph Park , Ryousei Takano , Jason Haga , George Sugihara , Gerald M. Pao

A high-performance parallel algorithm is proposed for modeling the propagation of acoustic and elastic waves in inhomogeneous media. An initial boundary-value problem is replaced by a series of boundary-value problems for a constant…

Numerical Analysis · Mathematics 2011-01-25 Alexey G. Fatyanov , Andrew V. Terekhov

The Virtual Element Method (VEM) is an extension of the Finite Element Method (FEM) used for handling polytopal meshes. This paper provides a brief introduction to the VEM for a two-dimensional Laplacian problem. Additionally, it highlights…

Numerical Analysis · Mathematics 2023-10-10 F. Dassi

Approximated numerical techniques, for the solution of the elastic wave scattering problem over semi-infinite domains are reviewed. The approximations involve the representation of the half-space by a boundary condition described in terms…

Computational Engineering, Finance, and Science · Computer Science 2014-10-14 Nicolás Guarín-Zapata , Juan Gómez , Juan Jaramillo

We revisit the cell-based smoothed finite element method (SFEM) for quadrilateral elements and extend it to arbitrary polygons and polyhedrons in 2D and 3D, respectively. We highlight the similarity between the SFEM and the virtual element…

Numerical Analysis · Mathematics 2014-10-08 Sundararajan Natarajan , Stéphane P. A. Bordas , Ean Tat Ooi

The study performs large-eddy simulations of supersonic free jet flows using the Discontinuous Galerkin Spectral Element Method (DGSEM). The main objective of the present work is to assess the resolution requirements for adequate simulation…

Fluid Dynamics · Physics 2024-03-22 Diego F. Abreu , João Luiz F. Azevedo , Carlos Junqueira-Junior

Full-wave 3D electromagnetic simulations of complex planar devices, multilayer interconnects, and chip packages are presented for wide-band frequency-domain analysis using the finite difference integration technique developed in the PETSc…

Computational Engineering, Finance, and Science · Computer Science 2017-05-25 Amir Geranmayeh

In this work, possibility of simulating biological organs in realtime using the Boundary Element Method (BEM) is investigated. Biological organs are assumed to follow linear elastostatic material behavior, and constant boundary element is…

Computational Engineering, Finance, and Science · Computer Science 2014-02-11 Kirana Kumara P

Computational spectral imaging is drawing increasing attention owing to the snapshot advantage, and amplitude, phase, and wavelength encoding systems are three types of representative implementations. Fairly comparing and understanding the…

Image and Video Processing · Electrical Eng. & Systems 2023-12-22 Xinyuan Liu , Lizhi Wang , Lingen Li , Chang Chen , Xue Hu , Fenglong Song , Youliang Yan

We introduce Model-Distributed Inference for Large-Language Models (MDI-LLM), a novel framework designed to facilitate the deployment of state-of-the-art large-language models (LLMs) across low-power devices at the edge. This is…

Machine Learning · Computer Science 2025-05-27 Davide Macario , Hulya Seferoglu , Erdem Koyuncu

The EMI (Extracellular-Membrane-Intracellular) model describes electrical activity in excitable tissue, where the extracellular and intracellular spaces and cellular membrane are explicitly represented. The model couples a system of partial…

Numerical Analysis · Mathematics 2023-07-06 Nanna Berre , Marie E. Rognes , Andre Massing

The finite element method (FEM) is among the most commonly used numerical methods for solving engineering problems. Due to its computational cost, various ideas have been introduced to reduce computation times, such as domain decomposition,…

Computational Engineering, Finance, and Science · Computer Science 2019-11-07 Andrea Mendizabal , Pablo Márquez-Neila , Stéphane Cotin

The progression of scientific computing resources has enabled the numerical approximation of mathematical models describing complex physical phenomena. A significant portion of researcher time is typically dedicated to the development of…

Mathematical Software · Computer Science 2015-06-22 Paul T. Bauman , Roy H. Stogner