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PolyMAPS is an open-source library that helps researchers to initialize LAMMPS molecular dynamics simulations. It introduces an integrated workflow by combining preparation, launching, visualization, and analysis into a single Jupyter…

Chemical Physics · Physics 2023-11-14 Xiaoli Yan , Santanu Chaudhuri

The mathematical software system polymake provides a wide range of functions for convex polytopes, simplicial complexes, and other objects. A large part of this paper is dedicated to a tutorial which exemplifies the usage. Later sections…

Combinatorics · Mathematics 2007-05-23 Ewgenij Gawrilow , Michael Joswig

LevelScheme is a scientific figure preparation system for Mathematica. The main emphasis is upon the construction of level schemes, or level energy diagrams, as used in nuclear, atomic, molecular, and hadronic physics. LevelScheme also…

Computational Physics · Physics 2007-05-23 M. A. Caprio

Although simulation represents a major advance in the understanding of problems in complex systems, the field currently does not has standards in place that would guide the reporting of the data underlying each model, the process for model…

Chaotic Dynamics · Physics 2011-12-26 Elias Carvalho , Luciano Andrade , Ricardo Chaim , Ricardo Pietrobon

To understand the universe and to interpret the cosmological parameters governing its evolution it is necessary to contrast the data from galaxy surveys with simulation. Typically it entails using computationally expensive N -body…

Cosmology and Nongalactic Astrophysics · Physics 2019-05-02 Tolga Yapici , Zachery Brown , Regina Demina , Segev BenZvi

To address increasing compute demand from recent multi-model workloads with heavy models like large language models, we propose to deploy heterogeneous chiplet-based multi-chip module (MCM)-based accelerators. We develop an advanced…

Hardware Architecture · Computer Science 2023-12-18 Mohanad Odema , Hyoukjun Kwon , Mohammad Abdullah Al Faruque

To facilitate rational molecular and materials design, this research proposes an integrated computational framework that combines stochastic simulation, ab initio quantum chemistry, and molecular docking. The suggested workflow allows…

Materials Science · Physics 2026-01-08 Md Rakibul Karim Akanda , Michael P. Richard

The MCPlas toolbox represents a collection of MATLAB functions for the automated generation of an equation-based fluid-Poisson model for non-thermal plasmas in the multiphysics simulation software COMSOL. Following the development of the…

Machine learning (ML) components are being added to more and more critical and impactful software systems, but the software development process of real-world production systems from prototyped ML models remains challenging with additional…

Software Engineering · Computer Science 2024-05-07 Jie JW Wu

Compact semiconductor device models are essential for efficiently designing and analyzing large circuits. However, traditional compact model development requires a large amount of manual effort and can span many years. Moreover, inclusion…

Machine Learning · Computer Science 2020-01-07 K. Aadithya , P. Kuberry , B. Paskaleva , P. Bochev , K. Leeson , A. Mar , T. Mei , E. Keiter

We propose an algorithm for molecular dynamics or Monte Carlo simulations that uses an interpolation procedure to estimate potential energy values from energies and gradients evaluated previously at points of a simplicial mesh. We chose an…

Computational Physics · Physics 2020-01-07 Konstantin Karandashev , Jiri Vanicek

A prescription is presented for the interpolation between multi-dimensional distribution templates based on one or multiple model parameters. The technique uses a linear combination of templates, each created using fixed values of the…

Data Analysis, Statistics and Probability · Physics 2014-10-29 Max Baak , Stefan Gadatsch , Robert Harrington , Wouter Verkerke

multisphere is an open-source Python package for generating multi-sphere representations of complex particles for use in DEM simulations. It reconstructs triangulated surface meshes and voxelized volumes as sets of intersecting spheres and…

Soft Condensed Matter · Physics 2026-04-23 Felix Buchele , Patric Müller , Thorsten Pöschel

We review progress in the development of physically realistic three dimensional simulated models of the galaxy.We consider the scales from star forming molecular clouds to the full spiral disc. Models are computed using hydrodynamic (HD) or…

Astrophysics of Galaxies · Physics 2013-04-01 Frederick A. Gent

We describe an assembly of numerical tools to model the output data of the Planck satellite. These start with the generation of a CMB sky in a chosen cosmology, add in various foreground sources, convolve the sky signal with arbitrary, even…

Astrophysics · Physics 2009-11-11 Martin Reinecke , Klaus Dolag , Reinhard Hell , Matthias Bartelmann , Torsten Ensslin

3D detection is a critical task to understand spatial characteristics of the environment and is used in a variety of applications including robotics, augmented reality, and image retrieval. Training performant detection models require…

Computer Vision and Pattern Recognition · Computer Science 2025-03-21 P. Schulz , T. Hempel , A. Al-Hamadi

Very High Resolution satellite and aerial imagery are used to monitor and conduct large scale surveys of ecological systems. Convolutional Neural Networks have successfully been employed to analyze such imagery to detect large animals and…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-29 Aymen Al-Saadi , Ioannis Paraskevakos , Bento Collares Gonçalves , Heather J. Lynch , Shantenu Jha , Matteo Turilli

Typical design flows are hierarchical and rely on assembling many individual technology elements from standard cells to complete boards. Providers use compact models to provide simplified views of their products to their users. Designers…

Hardware Architecture · Computer Science 2021-04-23 Dan Alexandrescu , Aneesh Balakrishnan , Thomas Lange , Maximilien Glorieux

This work brings together some of the most common machine learning (ML) algorithms, and the objective is to make a comparison at the level of obtained results from a set of unbalanced data. This dataset is composed of almost 17 thousand…

This paper describes a deep-SDM framework, MALPOLON. Written in Python and built upon the PyTorch library, this framework aims to facilitate training and inferences of deep species distribution models (deep-SDM) and sharing for users with…

Machine Learning · Computer Science 2024-09-27 Theo Larcher , Lukas Picek , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Alexis Joly