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Predicting stroke risk is a complex challenge that can be enhanced by integrating diverse clinically available data modalities. This study introduces a self-supervised multimodal framework that combines 3D brain imaging, clinical data, and…

Computer Vision and Pattern Recognition · Computer Science 2025-07-09 Camille Delgrange , Olga Demler , Samia Mora , Bjoern Menze , Ezequiel de la Rosa , Neda Davoudi

Breast cancer screening, primarily conducted through mammography, is often supplemented with ultrasound for women with dense breast tissue. However, existing deep learning models analyze each modality independently, missing opportunities to…

Image and Video Processing · Electrical Eng. & Systems 2023-11-16 Yiqiu Shen , Jungkyu Park , Frank Yeung , Eliana Goldberg , Laura Heacock , Farah Shamout , Krzysztof J. Geras

This paper introduces PDEformer, a neural solver for partial differential equations (PDEs) capable of simultaneously addressing various types of PDEs. We propose to represent the PDE in the form of a computational graph, facilitating the…

Numerical Analysis · Mathematics 2025-01-28 Zhanhong Ye , Xiang Huang , Leheng Chen , Hongsheng Liu , Zidong Wang , Bin Dong

Medical image recognition serves as a key way to aid in clinical diagnosis, enabling more accurate and timely identification of diseases and abnormalities. Vision transformer-based approaches have proven effective in handling various…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Zunhui Xia , Hongxing Li , Libin Lan

Text-prompted foundation models for medical image segmentation offer an intuitive way to delineate anatomical structures from natural language queries, but their predictions often lack spatial precision and degrade under domain shift. In…

Computer Vision and Pattern Recognition · Computer Science 2025-12-01 Xuchen Li , Hengrui Gu , Mohan Zhang , Qin Liu , Zhen Tan , Xinyuan Zhu , Huixue Zhou , Tianlong Chen , Kaixiong Zhou

Accurate clinical prognosis requires synthesizing structured Electronic Health Records (EHRs) with real-time physiological signals like the Electrocardiogram (ECG). Large Language Models (LLMs) offer a powerful reasoning engine for this…

Machine Learning · Computer Science 2026-01-27 Jialu Tang , Tong Xia , Yuan Lu , Aaqib Saeed

Accurate blood glucose prediction can enable novel interventions for type 1 diabetes treatment, including personalized insulin and dietary adjustments. Although recent advances in transformer-based architectures have demonstrated the power…

Quantitative Methods · Quantitative Biology 2025-05-15 Meryem Altin Karagoz , Marc D. Breton , Anas El Fathi

Electronic Health Records (EHRs) have become increasingly popular to support clinical decision-making and healthcare in recent decades. EHRs usually contain heterogeneous information, such as structural data in tabular form and unstructured…

Machine Learning · Computer Science 2024-03-15 Hejie Cui , Xinyu Fang , Ran Xu , Xuan Kan , Joyce C. Ho , Carl Yang

Despite the proven effectiveness of Transformer neural networks across multiple domains, their performance with Electronic Health Records (EHR) can be nuanced. The unique, multidimensional sequential nature of EHR data can sometimes make…

Machine Learning · Computer Science 2023-11-13 Yogesh Kumar , Alexander Ilin , Henri Salo , Sangita Kulathinal , Maarit K. Leinonen , Pekka Marttinen

In the fields of brain-computer interaction and cognitive neuroscience, effective decoding of auditory signals from task-based functional magnetic resonance imaging (fMRI) is key to understanding how the brain processes complex auditory…

Neurons and Cognition · Quantitative Biology 2024-06-05 Wanli Ma , Xuegang Tang , Jin Gu , Ying Wang , Yuling Xia

Over the past decade, Deep Convolutional Neural Networks have been widely adopted for medical image segmentation and shown to achieve adequate performance. However, due to the inherent inductive biases present in the convolutional…

Computer Vision and Pattern Recognition · Computer Science 2021-07-08 Jeya Maria Jose Valanarasu , Poojan Oza , Ilker Hacihaliloglu , Vishal M. Patel

Tabular data in relational databases represents a significant portion of industrial data. Hence, analyzing and interpreting tabular data is of utmost importance. Application tasks on tabular data are manifold and are often not specified…

Machine Learning · Computer Science 2025-07-09 Astrid Franz , Frederik Hoppe , Marianne Michaelis , Udo Göbel

Transformer-based architectures have shown remarkable performance in vision and language tasks but pose unique challenges for safety-critical applications. This paper presents a conceptual framework for integrating Transformers into…

Software Engineering · Computer Science 2026-01-28 Sven Kirchner , Nils Purschke , Chengdong Wu , Alois Knoll

Current challenges in developing foundational models for volumetric imaging data, such as magnetic resonance imaging (MRI), stem from the computational complexity of training state-of-the-art architectures in high dimensions and curating…

Image and Video Processing · Electrical Eng. & Systems 2025-07-14 Ulzee An , Moonseong Jeong , Simon A. Lee , Aditya Gorla , Yuzhe Yang , Sriram Sankararaman

Large language models (LLMs) are primarily designed to understand unstructured text. When directly applied to structured formats such as tabular data, they may struggle to discern inherent relationships and overlook critical patterns. While…

Machine Learning · Computer Science 2024-10-11 Natraj Raman , Sumitra Ganesh , Manuela Veloso

Abstractive summarization, the task of generating a concise summary of input documents, requires: (1) reasoning over the source document to determine the salient pieces of information scattered across the long document, and (2) composing a…

Multimodal electronic health record (EHR) data can offer a holistic assessment of a patient's health status, supporting various predictive healthcare tasks. Recently, several studies have embraced the multitask learning approach in the…

Machine Learning · Computer Science 2024-06-19 Muhao Xu , Zhenfeng Zhu , Youru Li , Shuai Zheng , Yawei Zhao , Kunlun He , Yao Zhao

As protein informatics advances rapidly, the demand for enhanced predictive accuracy, structural analysis, and functional understanding has intensified. Transformer models, as powerful deep learning architectures, have demonstrated…

Machine Learning · Computer Science 2025-05-28 Xiaowen Ling , Zhiqiang Li , Yanbin Wang , Zhuhong You

We perform a comparative analysis of transformer-based models designed for modeling tabular data, specifically on an industry-scale dataset. While earlier studies demonstrated promising outcomes on smaller public or synthetic datasets, the…

Machine Learning · Computer Science 2023-11-27 Usneek Singh , Piyush Arora , Shamika Ganesan , Mohit Kumar , Siddhant Kulkarni , Salil R. Joshi

Transformer-based models have emerged as promising tools for time series forecasting. However, these model cannot make accurate prediction for long input time series. On the one hand, they failed to capture global dependencies within time…

Machine Learning · Computer Science 2023-08-16 YanJun Zhao , Ziqing Ma , Tian Zhou , Liang Sun , Mengni Ye , Yi Qian
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