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Graph Neural Networks (GNNs) have been widely adopted due to their strong performance. However, GNN training often relies on expensive, high-performance computing platforms, limiting accessibility for many tasks. Profiling of representative…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-12 Tong Qiao , Ao Zhou , Yingjie Qi , Yiou Wang , Han Wan , Jianlei Yang , Chunming Hu

Existing Graph Neural Network (GNN) training frameworks have been designed to help developers easily create performant GNN implementations. However, most existing GNN frameworks assume that the input graphs are static, but ignore that most…

Machine Learning · Computer Science 2023-12-06 Chaoyi Chen , Dechao Gao , Yanfeng Zhang , Qiange Wang , Zhenbo Fu , Xuecang Zhang , Junhua Zhu , Yu Gu , Ge Yu

Mini-batch inference of Graph Neural Networks (GNNs) is a key problem in many real-world applications. Recently, a GNN design principle of model depth-receptive field decoupling has been proposed to address the well-known issue of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-05 Bingyi Zhang , Hanqing Zeng , Viktor Prasanna

Graph convolutional networks (GCNs) enable end-to-end learning on graph structured data. However, many works assume a given graph structure. When the input graph is noisy or unavailable, one approach is to construct or learn a latent graph…

Computer Vision and Pattern Recognition · Computer Science 2023-07-19 Avishkar Saha , Oscar Mendez , Chris Russell , Richard Bowden

Graph neural networks (GNNs) are powerful tools for learning from graph data and are widely used in various applications such as social network recommendation, fraud detection, and graph search. The graphs in these applications are…

Machine Learning · Computer Science 2021-06-14 Jialin Dong , Da Zheng , Lin F. Yang , Geroge Karypis

Recently graph neural network (GNN) based algorithms were proposed to solve a variety of combinatorial optimization problems, including Maximum Cut problem, Maximum Independent Set problem and similar other…

Machine Learning · Computer Science 2023-06-06 David Gamarnik

Relational graph neural networks (RGNNs) are graph neural networks with dedicated structures for modeling the different types of nodes and edges in heterogeneous graphs. While RGNNs have been increasingly adopted in many real-world…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-10 Kun Wu , Mert Hidayetoğlu , Xiang Song , Sitao Huang , Da Zheng , Israt Nisa , Wen-mei Hwu

Graph neural networks (GNNs) are gaining increasing popularity as a promising approach to machine learning on graphs. Unlike traditional graph workloads where each vertex/edge is associated with a scalar, GNNs attach a feature tensor to…

Machine Learning · Computer Science 2020-09-30 Yuwei Hu , Zihao Ye , Minjie Wang , Jiali Yu , Da Zheng , Mu Li , Zheng Zhang , Zhiru Zhang , Yida Wang

Recent studies have shown that graph neural networks (GNNs) exhibit strong biases towards the node degree: they usually perform satisfactorily on high-degree nodes with rich neighbor information but struggle with low-degree nodes. Existing…

Machine Learning · Computer Science 2023-10-03 Mingxuan Ju , Tong Zhao , Wenhao Yu , Neil Shah , Yanfang Ye

We present GNN-Suite, a robust modular framework for constructing and benchmarking Graph Neural Network (GNN) architectures in computational biology. GNN-Suite standardises experimentation and reproducibility using the Nextflow workflow to…

Machine Learning · Computer Science 2025-05-19 Sebestyén Kamp , Giovanni Stracquadanio , T. Ian Simpson

Graph neural networks (GNNs) have emerged as a powerful approach for modelling and learning from graph-structured data. Multiple fields have since benefitted enormously from the capabilities of GNNs, such as recommendation systems, social…

Hardware Architecture · Computer Science 2023-07-06 Salma Afifi , Febin Sunny , Amin Shafiee , Mahdi Nikdast , Sudeep Pasricha

Graph Neural Networks (GNNs) have achieved significant success across various applications. However, their complex structures and inner workings can be challenging for non-AI experts to understand. To address this issue, this study presents…

Human-Computer Interaction · Computer Science 2025-12-18 Yilin Lu , Chongwei Chen , Yuxin Chen , Kexin Huang , Marinka Zitnik , Qianwen Wang

Graph Neural Networks (GNNs) have garnered a lot of recent interest because of their success in learning representations from graph-structured data across several critical applications in cloud and HPC. Owing to their unique compute and…

As the interest to Graph Neural Networks (GNNs) is growing, the importance of benchmarking and performance characterization studies of GNNs is increasing. So far, we have seen many studies that investigate and present the performance and…

Machine Learning · Computer Science 2022-12-21 Taha Tekdoğan , Serkan Göktaş , Ayse Yilmazer-Metin

This paper presents a novel approach for accelerating n-body simulations by integrating a physics-informed graph neural networks (GNN) with traditional numerical methods. Our method implements a leapfrog-based simulation engine to generate…

Machine Learning · Computer Science 2025-04-03 Víctor Ramos-Osuna , Alberto Díaz-Álvarez , Raúl Lara-Cabrera

Graph neural networks (GNNs) have gained significant popularity due to the powerful capability to extract useful representations from graph data. As the need for efficient GNN computation intensifies, a variety of programming abstractions…

Machine Learning · Computer Science 2023-10-24 Yingjie Qi , Jianlei Yang , Ao Zhou , Tong Qiao , Chunming Hu

Graph Neural Networks (GNNs) have emerged as a powerful tool for learning from graph-structured data. However, even state-of-the-art architectures have limitations on what structures they can distinguish, imposing theoretical limits on what…

Machine Learning · Computer Science 2023-07-03 Eren Akbiyik , Florian Grötschla , Beni Egressy , Roger Wattenhofer

Graph neural networks (GNNs) have been widely adopted for semi-supervised learning on graphs. A recent study shows that the graph random neural network (GRAND) model can generate state-of-the-art performance for this problem. However, it is…

Machine Learning · Computer Science 2022-03-15 Wenzheng Feng , Yuxiao Dong , Tinglin Huang , Ziqi Yin , Xu Cheng , Evgeny Kharlamov , Jie Tang

\textit{Graph Neural Network} (GNN) is a promising approach for analyzing graph-structured data that tactfully captures their dependency information via node-level message passing. It has achieved state-of-the-art performances in many…

Machine Learning · Computer Science 2021-05-05 Feng Shi , Ahren Yiqiao Jin , Song-Chun Zhu

Graph neural networks (GNNs) have seen extensive application in domains such as social networks, bioinformatics, and recommendation systems. However, the irregularity and sparsity of graph data challenge traditional computing methods, which…

Machine Learning · Computer Science 2025-02-25 Ka Wai Wu
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